[AMBER] Automatic cation an anion detection for GAFF

From: Husak Michal via AMBER <amber.ambermd.org>
Date: Sun, 10 Nov 2024 17:37:13 +0000

Hi

We develop a method for fast molecular crystal structure verification based on GAFF2 force field usage ...
The isdue is detection of anions an kations ...
>From my understanding antechamber must have -nc 1 for kation an - nc -1 for anion.
But is there any way how to detect the charge of the fragments from its 3D coordinates or formula sum automaticaly ?
I can not find any simple method ....

Michal Husak
UCT Prague ...

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Nov 10 2024 - 10:00:02 PST
Custom Search