no, this is not correct, Amber24 includes pmemd.
you don't say anything about how you compiled Amber, perhaps you only set
up AmberTools? pmemd is in Amber.
look at
https://ambermd.org/Installation.php
On Tue, Sep 10, 2024 at 11:56 AM Wu, Ming Hsiu via AMBER <amber.ambermd.org>
wrote:
> Hello,
> I downloaded the source code from the official website and installed the
> non-commercial Amber24 and Amber24Tool on our CentOS server. But I cannot
> find pmemd in $AMBERHOME/bin/, only sander. The following is the at_summary
> for the test:
>
> 3033 file comparisons passed
> 2 file comparisons failed (2 of which can be ignored)
> 0 tests experienced errors
> Test log file saved as
> /data/mwu11/amber/amber24///logs/test_at_serial/2024-09-06_11-21-23.log
> No test diffs to save!
>
> I checked the Link<
> https://computecanada.github.io/molmodsim-amber-md-lesson/13-Running_Simulations/index.html>
> where it mentioned that pmemd is only available in commercial AMBER
> package, but this is not mentioned on the official website. Is it true?
>
> Thanks
> Ming Hsiu Wu
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>
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Received on Tue Sep 10 2024 - 09:30:02 PDT
