There are many variations. It would help to know what you want to learn
rather than just the method you want to use. Then people may be able to
make suggestions.
Also, as Dave Case mentioned here yesterday, Amber 16 is quite old and you
should consider using the current version.
On Wed, Aug 21, 2024, 1:31 AM RAMPRAKASH YADAV via AMBER <amber.ambermd.org>
wrote:
> Dear Amber Community,
>
> I hope this message finds you well.
> I am currently working on a project involving molecular dynamics
> simulations. I want your guidance regarding the per residue energy
> decomposition analysis using Amber16 (For MM/PBSA calculation). I would
> greatly appreciate any insights, suggestions, or references to best
> practices for conducting and interpreting this analysis.
> Thank you in advance for your time and assistance. I look forward to any
> advice or resources you can provide.
>
> *Thanks & Regards*,
> *Ramprakash Yadav*
> *Ph.D. Research Scholar,*
> NS(Physics)
> PDPM Indian Institute of Information Technology
> Design and Manufacturing Jabalpur (M.P.)- 482005
> (*An institute of National importance, established by the Ministry of
> Education, Government of India*)
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>
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Received on Wed Aug 21 2024 - 04:00:01 PDT
