Hi,
Sorry for the late reply. I deleted amber24_src and followed the same
procedure again. I attach the output of run_cmake (cmake.log) and
make install (make_install_ser.log).
OS: Slackware-current (rolling distro)
gcc --version
gcc (GCC) 14.1.0
cmake --version
cmake version 3.30.0
Thanks,
Edwin.
On 7/13/24 2:30 AM, Scott Brozell wrote:
> Hi,
>
> Wow, it really is like an episode of Gilligan's Island!
> Apparently, the stdbool checking has gone awry.
> Please send verbose and verbatim details:
> OS name and version, gcc -v, cmake -version, your build/cmake.log file.
> You can send the cmake.log directly to me since it is likely large.
>
> scott
>
> ps
>
> Amber: What's a funny quote from Gilligan's Island?
> ChatTV: Professor: Well, that glue is permanent! There's nothing on the
> island to dissolve it. Why do you know what it would take? It
> would take a polyester derivative of an organic hydroxide molecule.
>
> Mr. Howell: Watch your language! You're in the presence of a chemist!
>
> On Fri, Jul 12, 2024 at 08:38:48PM +0100, Edwin Helbert Aponte Angarita via AMBER wrote:
>> Thank you Scott for your reply. I tried with
>> -DBUILD_GUI=FALSE
>>
>> and got different errors:
>> [ 84%] Building C object AmberTools/src/leap/src/leap/CMakeFiles/leap_common_obj.dir/basics.c.o
>>
>> In file included from
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:41:
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.h:385:9: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 385 | extern BOOL GbInterrupt;
>> | ^~~~
>>
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.h:450:8: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 450 | extern BOOL GbPrintPrefix;
>>
>> | ^~~~
>>
>> | sBOOL
>>
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.h:779:8: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 779 | extern BOOL GbTestMemory;
>>
>> | ^~~~
>>
>> | sBOOL
>>
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.h:962:8: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 962 | extern BOOL bStringToDouble( char *cPData,
>> double *dPData );
>> | ^~~~
>>
>> | sBOOL
>>
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.h:963:8: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 963 | extern BOOL bStringToInt( char *cPData, int *iPData );
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.h:969:8: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 969 | extern BOOL bMessageCheck( char *sFile );
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.h:975:33:
>> error: unknown type name ???BOOL???; did you mean ???sBOOL????
>> 975 | BOOL bComplain );
>> | ^~~~
>> | sBOOL
>> In file included from
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/zMatrix.h:43,
>> from
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:43:
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/vector.h:83:46: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 83 | VECTOR *vPA, BOOL bA, VECTOR
>> *vPB, BOOL bB,
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/vector.h:83:68: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 83 | VECTOR *vPA, BOOL bA, VECTOR
>> *vPB, BOOL bB,
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/vector.h:84:46: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 84 | VECTOR *vPC, BOOL bC, VECTOR
>> *vPD, BOOL bD );
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/vector.h:84:68: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 84 | VECTOR *vPC, BOOL bC, VECTOR
>> *vPD, BOOL bD );
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:57:1: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 57 | BOOL GbInterrupt = FALSE;
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:237:1: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 237 | BOOL
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:261:1: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 261 | BOOL
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:317:1: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 317 | BOOL GbTestMemory = FALSE;
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:347:42:
>> error: unknown type name ???BOOL???; did you mean ???sBOOL????
>> 347 | DebugMemoryTest( char *sFile, int iLine, BOOL bReport )
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c: In function
>> ???DebugMalloc???:
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:444:5: error:
>> implicit declaration of function ???DebugMemoryTest???
>> [-Wimplicit-function-declaration]
>>
>> 444 | DebugMemoryTest( sFile, iLine, FALSE );
>> | ^~~~~~~~~~~~~~~
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c: At top level:
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:638:1: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 638 | BOOL
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:906:53:
>> error: unknown type name ???BOOL???; did you mean ???sBOOL????
>> 906 | fBasicsMyFopen( char *sFilename, char *sAttributes, BOOL
>> bComplain )
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:989:9: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 989 | BOOL bSinkUsed;
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:990:9: error:
>> unknown type name ???BOOL???; did you mean ???sBOOL????
>> 990 | BOOL bPrintPrefix;
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c: In function
>> ???iCreatePrintSink???:
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:1026:1:
>> error: unknown type name ???BOOL???; did you mean ???sBOOL????
>> 1026 | BOOL bFoundOne;
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c: At top level:
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:1198:1:
>> error: unknown type name ???BOOL???; did you mean ???sBOOL????
>> 1198 | BOOL GbPrintPrefix = TRUE;
>> | ^~~~
>> | sBOOL
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c: In function
>> ???myPrintString???:
>> /tmp/amber24_src/AmberTools/src/leap/src/leap/basics.c:1237:1:
>> error: unknown type name ???BOOL???; did you mean ???sBOOL????
>> 1237 | BOOL bPrintPrefix;
>> | ^~~~
>> | sBOOL
>> make[2]: *** [AmberTools/src/leap/src/leap/CMakeFiles/leap_common_obj.dir/build.make:76: AmberTools/src/leap/src/leap/CMakeFiles/leap_common_obj.dir/basics.c.o]
>> Error 1
>>
>> make[1]: *** [CMakeFiles/Makefile2:4993:
>> AmberTools/src/leap/src/leap/CMakeFiles/leap_common_obj.dir/all]
>> Error 2
>> make: *** [Makefile:156: all] Error 2
>>
>>
>> By the way, I knew about the difficulties to get inter-version
>> portability with GNU compilers but not about the plight of the crew
>> and passengers of SS Minnow. Good to learn something new.
>>
>> Regards,
>> Edwin.
>>
>> On 7/12/24 1:52 PM, Scott Brozell wrote:
>>> Hi,
>>>
>>> On Fri, Jul 12, 2024 at 01:34:34AM +0100, Edwin Helbert Aponte Angarita via AMBER wrote:
>>>> I am trying to compile Amber24 using Gcc 14.1.0. I run:
>>>> tar -xjf AmberTools24.tar.bz2
>>>> tar -xjf Amber24.tar.bz2
>>>> cd amber24_src
>>>> ./update_amber --update
>>>> cd build
>>>> ./run_cmake
>>>> make install
>>>>
>>>> and then I get the following error:
>>>> [ 86%] Building C object AmberTools/src/leap/src/leap/CMakeFiles/leap_xleap_obj.dir/xAction.c.o
>>>> /tmp/amber24_src/AmberTools/src/leap/src/leap/xAction.c: In function
>>>> ???zActionTwistTorsions???:
>>>> /tmp/amber24_src/AmberTools/src/leap/src/leap/xAction.c:1108:49:
>>>> error: passing argument 1 of ???BuildRotateAroundBondFromTo??? from
>>>> incompatible pointer type [-Wincompatible-pointer-types]
>>>> 1108 | BuildRotateAroundBondFromTo( tTank->tank.uUnit,
>>>> | ~~~~~~~~~~~^~~~~~
>>>> | |
>>>> | UNIT {aka UNITt *}
>>>> In file included from
>>>> /tmp/amber24_src/AmberTools/src/leap/src/leap/xAction.c:52:
>>>> /tmp/amber24_src/AmberTools/src/leap/src/leap/build.h:68:64: note:
>>>> expected ???CONTAINER??? {aka ???struct CONTAINERSTRUCT *???} but
>>>> argument is of type ???UNIT??? {aka ???UNITt *???}
>>>
>>> The latest version of GNU compilers used during release candidate
>>> testing was 13.2.0. There are 2 ~easy workarounds:
>>>
>>> A. Install an older compiler; the latest from the 13 or 12 series are
>>> likely to work. Then run clean_build and reinstall. This should
>>> get you all of Amber.
>>>
>>> B. Edit run_cmake and add this to the appropriate cmake command:
>>> -DBUILD_GUI=FALSE
>>> Then rebuild. This should get you Amber without xLEaP.
>>> If you need xLEaP, probably unlikely, then wait for us to
>>> release a patch and then rebuild again.
>>>
>>> It'll likely be a few days before the patch becomes available.
>>>
>>>
>>> In the dark ages, before cmake, users could've done this:
>>> make AMBERBUILDFLAGS="-Wno-error=incompatible-pointer-types"
>>>
>>> Now that would've been an easy workaround.
>>>
>>>
>>> It looks like there will be 5 of these errors across 3 files.
>>> The patching should be straightforward, we just have to cast away
>>> these 5 passengers from GNU's Island.
>>>
>>> Amber: What is GNU's Island ?
>>> ChatTV: That's an allusion to the 1960's sitcom Gilligan's Island.
>>>
>>> Amber: Please elaborate.
>>> ChatTV: I love your good manners!
>>> Many episodes portray the passengers' and the crews' unsuccessful
>>> attempts to escape their plight: Much like the application or
>>> maintenance programmer is never able to escape the plight of the
>>> ad hoc type-checking myopathy of the GNU compiler developers.
>>>
>>> Amber: Wow, that's deep!
>>> ChatTV: Deep is as deep does.
>>>
>>> Amber: Do you think ?
>>> ChatTV: I am.
>>>
>>> Amber: Ohh, Descartes!
>>> ChatTV: No, that's a different TV show:
>>> De plane! De plane!
>>> from Fantasy Island.
>>>
>>> Amber: Say good night ChatTV.
>>> ChatTV: Good night ChatTV!
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Received on Wed Jul 17 2024 - 19:00:01 PDT
