[AMBER] Parameterization Issue

From: Kavinda Kashi Juliyan Gunasinghe via AMBER <amber.ambermd.org>
Date: Sun, 9 Jun 2024 05:18:23 +0000

Dear AMBER users,

I have modelled an AF3 protein strucutre which consists of Gamma-carboxylated Glus (CGU). However, I have an issue with generating the Main Chain file for the which gives me several errors that in which several bond and angle parameters are missing. Can I know how I can generate the correct CIF file and then generate the correct main chain file for this protein? I have attached my protein structure in this email.

Thank you inadvance!
Jul


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Received on Sat Jun 08 2024 - 22:30:02 PDT
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