Re: [AMBER] How to fix "FATAL: Atom .R<***> does not have a type"?

From: Carlos Simmerling via AMBER <amber.ambermd.org>
Date: Wed, 17 Apr 2024 21:07:03 -0400

Proline does not have an atom named H.

On Wed, Apr 17, 2024, 7:59 PM ABDELATIF MESSAOUDI via AMBER <
amber.ambermd.org> wrote:

> Dear AMBER users,
> I want to perform a protein-ligand MD simulation using Amber. I have
> generated ligand frcmod, lib, rst7, and prmtop files. Then, I loaded my
> complex file, which contained the ligand and protein in water (generated
> using Packmol-memgen). However, when I tried to save the rst7 and prmtop
> files for the complex, I encountered this error:
> 'FATAL: Atom .R<***> does not have a type.'
>
> [image: image.png]
>
>
> Can anyone help me figure this out?"
>
> Best regards
> Abdelatif
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Wed Apr 17 2024 - 18:30:02 PDT
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