[AMBER] Pre-command is not working

From: ABDELATIF MESSAOUDI via AMBER <amber.ambermd.org>
Date: Tue, 2 Apr 2024 23:54:14 +0100

Dear AMBER users,

I run pre-command to create non-solvated file from solvated complex
(cpx.top):

ante-MMPBSA.py -p SK.top -c cpxnosolv.top -s :WAT,Na+,Cl- -r receptor.top
-l ligand.top -n :MOL --radii=mbondi2


I am getting the :

Error: parmed cannot be found!


best regards

Abdelatif
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Apr 02 2024 - 16:00:02 PDT