Dear AMBER users,
I am trying to install AMBER22. After running "./run_cmake"
I am getting the error :
[ 93%] [NAB] Preprocessing mmpbsa_entropy.nab
[ 93%] [NAB] Compiling mmpbsa_entropy.nab
[ 93%] Building C object
AmberTools/src/mmpbsa_py/CMakeFiles/mmpbsa_py_nabnmode.dir/CMakeFiles/nabfiles/mmpbsa_entropy.c.o
[ 93%] Linking C executable mmpbsa_py_nabnmode
/usr/bin/ld: warning: rism3d_closure_c.F90.o: requires executable stack
(because the .note.GNU-stack section is executable)
[ 93%] Built target mmpbsa_py_nabnmode
[ 93%] [NAB] Preprocessing mmpbsa_energy.nab
[ 94%] [NAB] Compiling mmpbsa_energy.nab
[ 94%] Building C object
AmberTools/src/mmpbsa_py/CMakeFiles/mmpbsa_py_energy.dir/CMakeFiles/nabfiles/mmpbsa_energy.c.o
[ 94%] Linking C executable mmpbsa_py_energy
/usr/bin/ld: warning: rism3d_closure_c.F90.o: requires executable stack
(because the .note.GNU-stack section is executable)
[ 94%] Built target mmpbsa_py_energy
[ 94%] Building pysander native library
Copying sander extension source to sanderles...
running build
running build_py
creating
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build
creating
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/lib.linux-x86_64-cpython-312
creating
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/lib.linux-x86_64-cpython-312/sander
copying sander/__init__.py ->
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/lib.linux-x86_64-cpython-312/sander
creating
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/lib.linux-x86_64-cpython-312/sanderles
copying sanderles/__init__.py ->
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/lib.linux-x86_64-cpython-312/sanderles
running build_ext
building 'sander.pysander' extension
creating
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/temp.linux-x86_64-cpython-312
creating
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/temp.linux-x86_64-cpython-312/sander
creating
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/temp.linux-x86_64-cpython-312/sander/src
icc -fno-strict-overflow -DNDEBUG -O2 -Wall -fPIC -O2 -isystem
/home/lcmvar/SOFT/amber22_src/build/CMakeFiles/miniconda/install/include
-fPIC -O2 -isystem
/home/lcmvar/SOFT/amber22_src/build/CMakeFiles/miniconda/install/include
-fPIC -I/home/lcmvar/SOFT/amber22_src/AmberTools/src/include
-I/home/lcmvar/SOFT/amber22_src/AmberTools/src/sander
-I/home/lcmvar/SOFT/amber22_src/build/CMakeFiles/miniconda/install/include/python3.12
-c sander/src/pysandermodule.c -o
/home/lcmvar/SOFT/amber22_src/build/AmberTools/src/pysander/CMakeFiles/pysander-build/temp.linux-x86_64-cpython-312/sander/src/pysandermodule.o
error: command 'icc' failed: No such file or directory
make[2]: ***
[AmberTools/src/pysander/CMakeFiles/pysander.dir/build.make:76:
AmberTools/src/pysander/CMakeFiles/pysander-build/pysander-build.stamp]
Error 1
make[1]: *** [CMakeFiles/Makefile2:7442:
AmberTools/src/pysander/CMakeFiles/pysander.dir/all] Error 2
make: *** [Makefile:156: all] Error 2
(base) lcmvar.lcmvar-System-Version:~/SOFT/amber22_src/build$
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Received on Mon Mar 25 2024 - 11:30:02 PDT
