[AMBER] RMSD values are low

From: Godbole, Shivani via AMBER <amber.ambermd.org>
Date: Wed, 28 Feb 2024 17:05:47 +0000

Hello,
This is Shivani Godbole. I am running Constant pH Md simulations for my proteins. I have noticed the RMSD values after running the cpptraj command are quite low (around 3 A). What can be done about this?
Thank you,

Shivani Sujay Godbole, B. Pharm
Biomedical Sciences, Ph.D. Student
Penn State College of Medicine

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Received on Wed Feb 28 2024 - 09:30:02 PST