[AMBER] Improper torsion terms when building covalent bond in leap

From: Nicole Vita via AMBER <amber.ambermd.org>
Date: Tue, 27 Feb 2024 00:17:56 +0000

Hi,
I am trying to parameterize a covalent bond and am having problems with my torsion terms.
I was able to fix and add all the terms into the *.frcmod file that were missing except for one.
The following term continues to give me an error:

      Error: ** No torsion terms for atom types: CO-O2-c3-hc
        for atom CG at position 5.699000, -24.112000, 5.185000,
            atom OD2 at position 6.946000, -24.383000, 5.605000,
            atom C55 at position 7.254000, -24.434000, 6.997000,
        and atom HC55 at position 6.327000, -24.636000, 7.534000.

I went into the gaff2.dat file and tried multiple terms but the terms I added thinking they were the closest representation were:
                CO-O2-c3-hc 2 5.400 180.000 2.000 same as X -c -os-X

However, I am still getting the torsion term error when trying to write the *.inpcrd file.
Any help to solve this problem would be greatly appreciated.

Cheers,
Nicole


This email message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply email and destroy all copies of the original message. If you are the intended recipient, please be advised that the content of this message is subject to access, review and disclosure by the sender's email system administrator

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Feb 26 2024 - 16:30:02 PST
Custom Search