[AMBER] Force field parameters for modified RNA

From: Jenny 148 via AMBER <amber.ambermd.org>
Date: Mon, 19 Feb 2024 17:07:08 +0530

Hi,

We are working on RNA duplexes with multiple modifications. I have the
following queries regarding the same.


1. Are the force field parameters available for 2'-fluoro, 2'-OMe and PS
RNA modification?
2.Can you suggest force field library or any link, publications for these
modifications?
3.When multiple modifications are incorporated into a single duplex will
these cause difficulty in doing MD simulation.?

This is the first time I am doing any modified complex. So any help is
appreciated.


Jenny
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Received on Mon Feb 19 2024 - 04:00:02 PST
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