Dear Amber experts,
For several years, AMBER20 worked perfectly under RedHat Linux on my server
located in the university computer center.
Recently RedHat was changed to Rocky Linux 8 on my server.
So I had to install AMBER 20 from scratch, starting with the command:
./run_cmake
After a short run, the process aborted with the last message:
-- Configuring incomplete, errors occurred!
See below the full protocol.
I need your advice on how to solve the problem.
Thank you,
Michael
> ./run_cmake
-- **************************************************************************
-- Starting configuration of Amber version 20.0.0...
-- CMake Version: 3.26.5
-- For how to use this build system, please read this wiki:
--
http://ambermd.org/pmwiki/pmwiki.php/Main/CMake
-- For a list of important CMake variables, check here:
--
http://ambermd.org/pmwiki/pmwiki.php/Main/CMake-Common-Options
-- **************************************************************************
-- Setting C compiler to gcc
-- Setting CXX compiler to g++
-- Setting Fortran compiler to gfortran
-- Amber source found, building AmberTools and Amber
-- The C compiler identification is GNU 8.5.0
-- The CXX compiler identification is GNU 8.5.0
-- The Fortran compiler identification is GNU 8.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Testing if stdlib.h can be included...
-- Testing if stdlib.h can be included... yes
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found CUDA: /usr/local/cuda (found version "12.3")
-- Downloading Python 3 Miniconda
-- Detected Linux OS. Downloading the Linux installer
-- Using 64 bit miniconda
Downloading
http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -> /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/download/Miniconda3-latest-Linux-x86_64.sh
##################################################################################################################### 100.0%
Installing Miniconda Python.
PREFIX=/home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install
Unpacking payload ...
Installing base environment...
Downloading and Extracting Packages: ...working... done
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
-- Updating and installing required and optional packages...
Channels:
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
conda-24.1.0 | py311h06a4308_0 1.2 MB
------------------------------------------------------------
Total: 1.2 MB
The following packages will be UPDATED:
conda 23.11.0-py311h06a4308_0 --> 24.1.0-py311h06a4308_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Requirement already satisfied: pip in /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.11/site-packages (23.3.1)
Collecting pip
Using cached pip-23.3.2-py3-none-any.whl.metadata (3.5 kB)
Using cached pip-23.3.2-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 23.3.1
Uninstalling pip-23.3.1:
Successfully uninstalled pip-23.3.1
Successfully installed pip-23.3.2
Channels:
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install
added / updated specs:
- nomkl
The following packages will be downloaded:
package | build
---------------------------|-----------------
blas-1.0 | openblas 46 KB
nomkl-3.0 | 0 46 KB
------------------------------------------------------------
Total: 91 KB
The following NEW packages will be INSTALLED:
blas pkgs/main/linux-64::blas-1.0-openblas
nomkl pkgs/main/linux-64::nomkl-3.0-0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install
added / updated specs:
- conda-build
- cython=0.29
- ipython
- notebook
- numpy
- pytest
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
anyio-4.2.0 | py311h06a4308_0 237 KB
argon2-cffi-21.3.0 | pyhd3eb1b0_0 15 KB
argon2-cffi-bindings-21.2.0| py311h5eee18b_0 33 KB
asttokens-2.0.5 | pyhd3eb1b0_0 20 KB
async-lru-2.0.4 | py311h06a4308_0 20 KB
attrs-23.1.0 | py311h06a4308_0 161 KB
babel-2.11.0 | py311h06a4308_0 6.1 MB
beautifulsoup4-4.12.2 | py311h06a4308_0 268 KB
bleach-4.1.0 | pyhd3eb1b0_0 123 KB
chardet-4.0.0 |py311h06a4308_1003 218 KB
click-8.1.7 | py311h06a4308_0 221 KB
comm-0.1.2 | py311h06a4308_0 14 KB
conda-build-24.1.0 | py311h06a4308_0 825 KB
conda-index-0.4.0 | pyhd3eb1b0_0 173 KB
cython-0.29.36 | py311h5eee18b_0 2.6 MB
debugpy-1.6.7 | py311h6a678d5_0 2.4 MB
decorator-5.1.1 | pyhd3eb1b0_0 12 KB
defusedxml-0.7.1 | pyhd3eb1b0_0 23 KB
executing-0.8.3 | pyhd3eb1b0_0 18 KB
filelock-3.13.1 | py311h06a4308_0 24 KB
iniconfig-1.1.1 | pyhd3eb1b0_0 8 KB
ipykernel-6.28.0 | py311h06a4308_0 245 KB
ipython-8.20.0 | py311h06a4308_0 1.4 MB
jedi-0.18.1 | py311h06a4308_1 1.1 MB
jinja2-3.1.3 | py311h06a4308_0 353 KB
json5-0.9.6 | pyhd3eb1b0_0 21 KB
jsonschema-4.19.2 | py311h06a4308_0 190 KB
jsonschema-specifications-2023.7.1| py311h06a4308_0 15 KB
jupyter-lsp-2.2.0 | py311h06a4308_0 107 KB
jupyter_client-8.6.0 | py311h06a4308_0 233 KB
jupyter_core-5.5.0 | py311h06a4308_0 91 KB
jupyter_events-0.8.0 | py311h06a4308_0 41 KB
jupyter_server-2.10.0 | py311h06a4308_0 577 KB
jupyter_server_terminals-0.4.4| py311h06a4308_1 27 KB
jupyterlab-4.0.11 | py311h06a4308_0 4.5 MB
jupyterlab_pygments-0.1.2 | py_0 8 KB
jupyterlab_server-2.25.1 | py311h06a4308_0 113 KB
libgfortran-ng-11.2.0 | h00389a5_1 20 KB
libgfortran5-11.2.0 | h1234567_1 2.0 MB
liblief-0.12.3 | h6a678d5_0 1.9 MB
libopenblas-0.3.21 | h043d6bf_0 5.4 MB
libsodium-1.0.18 | h7b6447c_0 244 KB
markupsafe-2.1.3 | py311h5eee18b_0 25 KB
matplotlib-inline-0.1.6 | py311h06a4308_0 18 KB
mistune-2.0.4 | py311h06a4308_0 107 KB
more-itertools-10.1.0 | py311h06a4308_0 103 KB
nbclient-0.8.0 | py311h06a4308_0 120 KB
nbconvert-7.10.0 | py311h06a4308_0 513 KB
nbformat-5.9.2 | py311h06a4308_0 158 KB
nest-asyncio-1.5.6 | py311h06a4308_0 17 KB
notebook-7.0.6 | py311h06a4308_0 3.1 MB
notebook-shim-0.2.3 | py311h06a4308_0 26 KB
numpy-1.26.3 | py311h24aa872_0 10 KB
numpy-base-1.26.3 | py311hbfb1bba_0 8.3 MB
overrides-7.4.0 | py311h06a4308_0 36 KB
pandocfilters-1.5.0 | pyhd3eb1b0_0 11 KB
parso-0.8.3 | pyhd3eb1b0_0 70 KB
patch-2.7.6 | h7b6447c_1001 119 KB
patchelf-0.17.2 | h6a678d5_0 98 KB
pexpect-4.8.0 | pyhd3eb1b0_3 53 KB
pkginfo-1.9.6 | py311h06a4308_0 65 KB
prometheus_client-0.14.1 | py311h06a4308_0 120 KB
prompt-toolkit-3.0.43 | py311h06a4308_0 745 KB
prompt_toolkit-3.0.43 | hd3eb1b0_0 5 KB
psutil-5.9.0 | py311h5eee18b_0 463 KB
ptyprocess-0.7.0 | pyhd3eb1b0_2 17 KB
pure_eval-0.2.2 | pyhd3eb1b0_0 14 KB
py-lief-0.12.3 | py311h6a678d5_0 1.3 MB
pygments-2.15.1 | py311h06a4308_1 2.1 MB
pytest-7.4.0 | py311h06a4308_0 711 KB
python-dateutil-2.8.2 | pyhd3eb1b0_0 233 KB
python-fastjsonschema-2.16.2| py311h06a4308_0 247 KB
python-json-logger-2.0.7 | py311h06a4308_0 18 KB
python-libarchive-c-2.9 | pyhd3eb1b0_1 47 KB
pytz-2023.3.post1 | py311h06a4308_0 216 KB
pyyaml-6.0.1 | py311h5eee18b_0 210 KB
pyzmq-25.1.2 | py311h6a678d5_0 540 KB
referencing-0.30.2 | py311h06a4308_0 77 KB
rfc3339-validator-0.1.4 | py311h06a4308_0 10 KB
rfc3986-validator-0.1.1 | py311h06a4308_0 10 KB
rpds-py-0.10.6 | py311hb02cf49_0 1007 KB
scipy-1.11.4 | py311h24aa872_0 21.9 MB
send2trash-1.8.2 | py311h06a4308_0 32 KB
six-1.16.0 | pyhd3eb1b0_1 18 KB
sniffio-1.3.0 | py311h06a4308_0 17 KB
soupsieve-2.5 | py311h06a4308_0 92 KB
stack_data-0.2.0 | pyhd3eb1b0_0 22 KB
terminado-0.17.1 | py311h06a4308_0 37 KB
tinycss2-1.2.1 | py311h06a4308_0 46 KB
tornado-6.3.3 | py311h5eee18b_0 852 KB
traitlets-5.7.1 | py311h06a4308_0 259 KB
typing-extensions-4.9.0 | py311h06a4308_1 9 KB
typing_extensions-4.9.0 | py311h06a4308_1 72 KB
wcwidth-0.2.5 | pyhd3eb1b0_0 26 KB
webencodings-0.5.1 | py311h06a4308_1 25 KB
websocket-client-0.58.0 | py311h06a4308_4 87 KB
yaml-0.2.5 | h7b6447c_0 75 KB
zeromq-4.3.5 | h6a678d5_0 366 KB
------------------------------------------------------------
Total: 77.0 MB
The following NEW packages will be INSTALLED:
anyio pkgs/main/linux-64::anyio-4.2.0-py311h06a4308_0
argon2-cffi pkgs/main/noarch::argon2-cffi-21.3.0-pyhd3eb1b0_0
argon2-cffi-bindi~ pkgs/main/linux-64::argon2-cffi-bindings-21.2.0-py311h5eee18b_0
asttokens pkgs/main/noarch::asttokens-2.0.5-pyhd3eb1b0_0
async-lru pkgs/main/linux-64::async-lru-2.0.4-py311h06a4308_0
attrs pkgs/main/linux-64::attrs-23.1.0-py311h06a4308_0
babel pkgs/main/linux-64::babel-2.11.0-py311h06a4308_0
beautifulsoup4 pkgs/main/linux-64::beautifulsoup4-4.12.2-py311h06a4308_0
bleach pkgs/main/noarch::bleach-4.1.0-pyhd3eb1b0_0
chardet pkgs/main/linux-64::chardet-4.0.0-py311h06a4308_1003
click pkgs/main/linux-64::click-8.1.7-py311h06a4308_0
comm pkgs/main/linux-64::comm-0.1.2-py311h06a4308_0
conda-build pkgs/main/linux-64::conda-build-24.1.0-py311h06a4308_0
conda-index pkgs/main/noarch::conda-index-0.4.0-pyhd3eb1b0_0
cython pkgs/main/linux-64::cython-0.29.36-py311h5eee18b_0
debugpy pkgs/main/linux-64::debugpy-1.6.7-py311h6a678d5_0
decorator pkgs/main/noarch::decorator-5.1.1-pyhd3eb1b0_0
defusedxml pkgs/main/noarch::defusedxml-0.7.1-pyhd3eb1b0_0
executing pkgs/main/noarch::executing-0.8.3-pyhd3eb1b0_0
filelock pkgs/main/linux-64::filelock-3.13.1-py311h06a4308_0
iniconfig pkgs/main/noarch::iniconfig-1.1.1-pyhd3eb1b0_0
ipykernel pkgs/main/linux-64::ipykernel-6.28.0-py311h06a4308_0
ipython pkgs/main/linux-64::ipython-8.20.0-py311h06a4308_0
jedi pkgs/main/linux-64::jedi-0.18.1-py311h06a4308_1
jinja2 pkgs/main/linux-64::jinja2-3.1.3-py311h06a4308_0
json5 pkgs/main/noarch::json5-0.9.6-pyhd3eb1b0_0
jsonschema pkgs/main/linux-64::jsonschema-4.19.2-py311h06a4308_0
jsonschema-specif~ pkgs/main/linux-64::jsonschema-specifications-2023.7.1-py311h06a4308_0
jupyter-lsp pkgs/main/linux-64::jupyter-lsp-2.2.0-py311h06a4308_0
jupyter_client pkgs/main/linux-64::jupyter_client-8.6.0-py311h06a4308_0
jupyter_core pkgs/main/linux-64::jupyter_core-5.5.0-py311h06a4308_0
jupyter_events pkgs/main/linux-64::jupyter_events-0.8.0-py311h06a4308_0
jupyter_server pkgs/main/linux-64::jupyter_server-2.10.0-py311h06a4308_0
jupyter_server_te~ pkgs/main/linux-64::jupyter_server_terminals-0.4.4-py311h06a4308_1
jupyterlab pkgs/main/linux-64::jupyterlab-4.0.11-py311h06a4308_0
jupyterlab_pygmen~ pkgs/main/noarch::jupyterlab_pygments-0.1.2-py_0
jupyterlab_server pkgs/main/linux-64::jupyterlab_server-2.25.1-py311h06a4308_0
libgfortran-ng pkgs/main/linux-64::libgfortran-ng-11.2.0-h00389a5_1
libgfortran5 pkgs/main/linux-64::libgfortran5-11.2.0-h1234567_1
liblief pkgs/main/linux-64::liblief-0.12.3-h6a678d5_0
libopenblas pkgs/main/linux-64::libopenblas-0.3.21-h043d6bf_0
libsodium pkgs/main/linux-64::libsodium-1.0.18-h7b6447c_0
markupsafe pkgs/main/linux-64::markupsafe-2.1.3-py311h5eee18b_0
matplotlib-inline pkgs/main/linux-64::matplotlib-inline-0.1.6-py311h06a4308_0
mistune pkgs/main/linux-64::mistune-2.0.4-py311h06a4308_0
more-itertools pkgs/main/linux-64::more-itertools-10.1.0-py311h06a4308_0
nbclient pkgs/main/linux-64::nbclient-0.8.0-py311h06a4308_0
nbconvert pkgs/main/linux-64::nbconvert-7.10.0-py311h06a4308_0
nbformat pkgs/main/linux-64::nbformat-5.9.2-py311h06a4308_0
nest-asyncio pkgs/main/linux-64::nest-asyncio-1.5.6-py311h06a4308_0
notebook pkgs/main/linux-64::notebook-7.0.6-py311h06a4308_0
notebook-shim pkgs/main/linux-64::notebook-shim-0.2.3-py311h06a4308_0
numpy pkgs/main/linux-64::numpy-1.26.3-py311h24aa872_0
numpy-base pkgs/main/linux-64::numpy-base-1.26.3-py311hbfb1bba_0
overrides pkgs/main/linux-64::overrides-7.4.0-py311h06a4308_0
pandocfilters pkgs/main/noarch::pandocfilters-1.5.0-pyhd3eb1b0_0
parso pkgs/main/noarch::parso-0.8.3-pyhd3eb1b0_0
patch pkgs/main/linux-64::patch-2.7.6-h7b6447c_1001
patchelf pkgs/main/linux-64::patchelf-0.17.2-h6a678d5_0
pexpect pkgs/main/noarch::pexpect-4.8.0-pyhd3eb1b0_3
pkginfo pkgs/main/linux-64::pkginfo-1.9.6-py311h06a4308_0
prometheus_client pkgs/main/linux-64::prometheus_client-0.14.1-py311h06a4308_0
prompt-toolkit pkgs/main/linux-64::prompt-toolkit-3.0.43-py311h06a4308_0
prompt_toolkit pkgs/main/noarch::prompt_toolkit-3.0.43-hd3eb1b0_0
psutil pkgs/main/linux-64::psutil-5.9.0-py311h5eee18b_0
ptyprocess pkgs/main/noarch::ptyprocess-0.7.0-pyhd3eb1b0_2
pure_eval pkgs/main/noarch::pure_eval-0.2.2-pyhd3eb1b0_0
py-lief pkgs/main/linux-64::py-lief-0.12.3-py311h6a678d5_0
pygments pkgs/main/linux-64::pygments-2.15.1-py311h06a4308_1
pytest pkgs/main/linux-64::pytest-7.4.0-py311h06a4308_0
python-dateutil pkgs/main/noarch::python-dateutil-2.8.2-pyhd3eb1b0_0
python-fastjsonsc~ pkgs/main/linux-64::python-fastjsonschema-2.16.2-py311h06a4308_0
python-json-logger pkgs/main/linux-64::python-json-logger-2.0.7-py311h06a4308_0
python-libarchive~ pkgs/main/noarch::python-libarchive-c-2.9-pyhd3eb1b0_1
pytz pkgs/main/linux-64::pytz-2023.3.post1-py311h06a4308_0
pyyaml pkgs/main/linux-64::pyyaml-6.0.1-py311h5eee18b_0
pyzmq pkgs/main/linux-64::pyzmq-25.1.2-py311h6a678d5_0
referencing pkgs/main/linux-64::referencing-0.30.2-py311h06a4308_0
rfc3339-validator pkgs/main/linux-64::rfc3339-validator-0.1.4-py311h06a4308_0
rfc3986-validator pkgs/main/linux-64::rfc3986-validator-0.1.1-py311h06a4308_0
rpds-py pkgs/main/linux-64::rpds-py-0.10.6-py311hb02cf49_0
scipy pkgs/main/linux-64::scipy-1.11.4-py311h24aa872_0
send2trash pkgs/main/linux-64::send2trash-1.8.2-py311h06a4308_0
six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1
sniffio pkgs/main/linux-64::sniffio-1.3.0-py311h06a4308_0
soupsieve pkgs/main/linux-64::soupsieve-2.5-py311h06a4308_0
stack_data pkgs/main/noarch::stack_data-0.2.0-pyhd3eb1b0_0
terminado pkgs/main/linux-64::terminado-0.17.1-py311h06a4308_0
tinycss2 pkgs/main/linux-64::tinycss2-1.2.1-py311h06a4308_0
tornado pkgs/main/linux-64::tornado-6.3.3-py311h5eee18b_0
traitlets pkgs/main/linux-64::traitlets-5.7.1-py311h06a4308_0
typing-extensions pkgs/main/linux-64::typing-extensions-4.9.0-py311h06a4308_1
typing_extensions pkgs/main/linux-64::typing_extensions-4.9.0-py311h06a4308_1
wcwidth pkgs/main/noarch::wcwidth-0.2.5-pyhd3eb1b0_0
webencodings pkgs/main/linux-64::webencodings-0.5.1-py311h06a4308_1
websocket-client pkgs/main/linux-64::websocket-client-0.58.0-py311h06a4308_4
yaml pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
zeromq pkgs/main/linux-64::zeromq-4.3.5-h6a678d5_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting matplotlib
Downloading matplotlib-3.8.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib)
Downloading contourpy-1.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib)
Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib)
Downloading fonttools-4.47.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (157 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 157.6/157.6 kB 828.8 kB/s eta 0:00:00
Collecting kiwisolver>=1.3.1 (from matplotlib)
Downloading kiwisolver-1.4.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
Requirement already satisfied: numpy<2,>=1.21 in /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.11/site-packages (from matplotlib) (1.26.3)
Requirement already satisfied: packaging>=20.0 in /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.11/site-packages (from matplotlib) (23.1)
Collecting pillow>=8 (from matplotlib)
Downloading pillow-10.2.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
Collecting pyparsing>=2.3.1 (from matplotlib)
Downloading pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB)
Requirement already satisfied: python-dateutil>=2.7 in /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.11/site-packages (from matplotlib) (2.8.2)
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Downloading pyparsing-3.1.1-py3-none-any.whl (103 kB)
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Installing collected packages: pyparsing, pillow, kiwisolver, fonttools, cycler, contourpy, matplotlib
Successfully installed contourpy-1.2.0 cycler-0.12.1 fonttools-4.47.2 kiwisolver-1.4.5 matplotlib-3.8.2 pillow-10.2.0 pyparsing-3.1.1
Will remove 174 (182.3 MB) tarball(s).
Will remove 1 index cache(s).
Will remove 11 (19.2 MB) package(s).
There are no tempfile(s) to remove.
There are no logfile(s) to remove.
-- Miniconda install successful!
-- Found PythonLibs: /home/enz/shokhen/localdisk/amber20_src/build/CMakeFiles/miniconda/install/lib/libpython3.11.so (found version "3.11.5")
-- Checking for Python package numpy -- found
-- Checking for Python package scipy -- found
-- Checking for Python package matplotlib -- found
-- Checking for Python package setuptools -- found
-- Checking for Python package tkinter -- found
-- Checking for Python package distutils.sysconfig -- found
CMake Error at cmake/PythonBuildConfig.cmake:129 (message):
Failed to determine relative PYTHONPATH: python command failed with error
Traceback (most recent call last):
File "<string>", line 1, in <module>
KeyError: 'unix_prefix'
Call Stack (most recent call first):
CMakeLists.txt:122 (include)
-- Configuring incomplete, errors occurred!
If the cmake build report looks OK, you should now do the following:
make install
source /home/enz/shokhen/localdisk/amber20/amber.sh
Consider adding the last line to your login startup script, e.g. ~/.bashrc
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Received on Wed Feb 07 2024 - 10:00:02 PST
