Re: [AMBER] Amber to gromacs conversion

From: 王世玉 via AMBER <amber.ambermd.org>
Date: Tue, 2 Jan 2024 10:51:35 +0800 (GMT+08:00)

Dear Sourav Bhowmik:

I hope you can check that you used right python.
If not, you can:
1. find the location of right python interpreter.
2. run the amb2gro_top_gro.py with the absolute path of python, like '/usr/local/python amb2gro_top_gro.py -h' or '$AMBERHOME/miniconda/bin/python amb2gro_top_gro.py -h'

I hope this will help you.

Shiyu


&gt; -----原始邮件-----
&gt; 发件人: "Sourav Bhowmik via AMBER" <amber.ambermd.org>
&gt; 发送时间: 2024-01-01 19:30:34 (星期一)
&gt; 收件人: amber.ambermd.org
&gt; 抄送:
&gt; 主题: [AMBER] Amber to gromacs conversion
&gt;
&gt; Dear users,
&gt; I am trying to convert amber prmtop and inpcrd to gromacs format using
&gt; amb2gro_top_gro.py programme. The following error is encountered. Kindly
&gt; help me.
&gt;
&gt; sic.sic:~/ala$ amb2gro_top_gro.py
&gt; Traceback (most recent call last):
&gt; File "/home/sic/Downloads/amber22/bin/amb2gro_top_gro.py", line 7, in
&gt; <module>
&gt; import parmed as pmd
&gt; ModuleNotFoundError: No module named 'parmed'
&gt; sic.sic:~/ala$
&gt;
&gt; Sourav
&gt; _______________________________________________
&gt; AMBER mailing list
&gt; AMBER.ambermd.org
&gt; http://lists.ambermd.org/mailman/listinfo/amber
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Received on Mon Jan 01 2024 - 19:30:02 PST
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