[AMBER] Error while performing MMPBSA

From: Kriti Shukla via AMBER <amber.ambermd.org>
Date: Thu, 28 Dec 2023 11:16:36 +0530

Dear All,
           While doing MMPBSA calculation in serial I am getting error
like this -

/home/srabanicy/amber22/bin/cpptraj: error while loading shared libraries:
libgfortran.so.5: cannot open shared object file: No such file or directory
  File "/home/srabanicy/amber22/bin/MMPBSA.py", line 99, in <module>
    app.file_setup()

And on doing MMPBSA via parallel I am getting something like this but my
system has mpi4py installed -

Traceback (most recent call last):
  File "/home/srabanicy/amber22/bin/MMPBSA.py.MPI", line 53, in <module>
    from mpi4py import MPI
ModuleNotFoundError: No module named 'mpi4py'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/srabanicy/amber22/bin/MMPBSA.py.MPI", line 55, in <module>
    raise MMPBSA_Error('Could not import mpi4py package! Use serial version
'
MMPBSA_mods.exceptions.MMPBSA_Error: Could not import mpi4py package! Use
serial version or install mpi4py.

Yours Sincerely
Kriti Shukla
Research Scholar
Department of Chemistry
Indian Institute of Technology, Kharagpur
India. 721302
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Dec 27 2023 - 22:00:02 PST
Custom Search