Re: [AMBER] [Sender Not Verified] MSD calculation

From: Dulal Mondal via AMBER <amber.ambermd.org>
Date: Thu, 21 Dec 2023 14:19:34 +0530

Thank You, sir, for your reply. I use stfcdiffusion command to calculate
MSD. I am trying to calculate the MSD of active site water. But in "avout"
(avg.dat) captains such type of distance values.
     0 0.166
      1 0.032
      2 0.461
      3 0.751
      4 0.033
      5 1.701



    240 0.434
    241 109.077
    242 0.165
    243 0.762
But I chose upper distance 8 Angstrom from Zn.
Thanking You
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Received on Thu Dec 21 2023 - 01:00:02 PST
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