[AMBER] [LEaP] Atom does not have a type

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From: Thompson, Emma via AMBER <amber.ambermd.org>
Date: Sun, 17 Dec 2023 23:02:32 +0000

Hello Amber users!

I keep getting these errors when I run tleap and I am unsure how to fix them:

FATAL: Atom .R<TIP 21746>.A<OH2 1> does not have a type.
FATAL: Atom .R<X 21747>.A<KK 1> does not have a type.
FATAL: Atom .R<L X 21748>.A<CL 1> does not have a type.

I've looked at https://ambermd.org/tutorials/pengfei/index.php and https://github.com/choderalab/ambermini/blob/master/share/amber/dat/leap/cmd/leaprc.protein.ff14SB. I think they're helpful websites, but I am relatively new to this, so I am not sure what to do.

Any thoughts/solutions?

Thanks,
Emma
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Received on Sun Dec 17 2023 - 15:30:02 PST