Re: [AMBER] Looking for a force field with ester linkages between protein chains permitted.

From: FyD via AMBER <amber.ambermd.org>
Date: Fri, 01 Dec 2023 09:00:59 +0100

Dear David,

> Unable to find a standard force field which will accommodate ester
> linkage of domains..

See https://upjv.q4md-forcefieldtools.org/Tutorial/Tutorial-4.php
     https://upjv.q4md-forcefieldtools.org/Tutorial/Tutorial-4.php#SpltV
(an ester linkage is similar to the phosphodiester linkage in nucleic
acids from a charge derivation point of view)

Best Francois





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Received on Fri Dec 01 2023 - 00:30:03 PST
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