[AMBER] Converting a PDB trajectory to a NetCDF trajectory

From: Jing Qu via AMBER <amber.ambermd.org>
Date: Tue, 17 Oct 2023 12:55:09 -0400

Hi all,

Does anyone know how to convert a PDB trajectory to a NetCDF trajectory
format? I have seen the previous mailing list, say I could use:
trajin result.pdb
trajout result.nc netcdf

After I did that, it showed:
Error: No topology selected or no topologies present.
1 errors encountered reading input.

But I remembered it is said that we don't need to provide the topologies in
another answer. And my pdb trajectory could be opened by VMD, so the
topology should be present.

Best,
Jing
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Received on Tue Oct 17 2023 - 10:00:52 PDT
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