Hi,
You can load a trajectory by browsing and loading your prmtop first. On top of that load your .nc file.
If you want to see the confirmation at the end then simply load .ncrst file instead of .nc file.
Best,
Satyajit
________________________________
From: Kankana Bhattacharjee via AMBER <amber.ambermd.org>
Sent: 06 September 2023 11:38
To: AMBER Mailing List <amber.ambermd.org>
Subject: [AMBER] Visualizing amber MD trajectory in vmd:
Dear AMBER users,
I have performed MD simulation of protein ligand complex. Now, I want to
visualize the complex at the end point of simulation (say at 100 ns). How
can I do that job using VMD ?
Your suggestions would be appreciated.
Thanks & Regards
Kankana Bhattacharjee
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Received on Tue Sep 05 2023 - 23:30:02 PDT
