[AMBER] Calculate min distance between periodic images

From: Hocine EL KHAOUDI ENYOURY via AMBER <amber.ambermd.org>
Date: Mon, 29 May 2023 15:54:37 +0200

Dear Amber community,


Is there a way to track the minimum distance between a protein and its periodic image? In Gromacs was possible with gmx mindist -pi. I have tried so far with cpptraj and nativecontacts but I didn’t succeed

Thanks,

Hocine

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Received on Mon May 29 2023 - 07:00:03 PDT