Dear Amber users,
I've been trying to install amber for some time on a Mint linux cluster. Since my earlier attempts at the end of last year/early this year, the server has been upgraded from Mint 18 to 20. The GNU compliers (gcc, g++, gfortran) are all version 9.4.0, but the "make install" step fails, with the last few lines giving the following output:
[ 20%] Building C object AmberTools/src/netcdf-4.6.1/ncdump/CMakeFiles/ncdump.dir/nciter.c.o
[ 20%] Linking C executable ncdump
[ 20%] Built target ncdump
Scanning dependencies of target netcdff
[ 20%] Building Fortran object AmberTools/src/netcdf-fortran-4.4.4/fortran/CMakeFiles/netcdff.dir/module_netcdf_nc_data.F90.o
[ 20%] Building Fortran object AmberTools/src/netcdf-fortran-4.4.4/fortran/CMakeFiles/netcdff.dir/module_netcdf_nf_data.F90.o
[ 20%] Building Fortran object AmberTools/src/netcdf-fortran-4.4.4/fortran/CMakeFiles/netcdff.dir/module_netcdf_nf_interfaces.F90.o
[ 20%] Building Fortran object AmberTools/src/netcdf-fortran-4.4.4/fortran/CMakeFiles/netcdff.dir/module_netcdf_f03.f90.o
f951: Fatal Error: Reading module ‘netcdf_nf_interfaces’ at line 1883 column 1: Unexpected EOF
compilation terminated.
make[2]: *** [AmberTools/src/netcdf-fortran-4.4.4/fortran/CMakeFiles/netcdff.dir/build.make:128: AmberTools/src/netcdf-fortran-4.4.4/fortran/CMakeFiles/netcdff.dir/module_netcdf_f03.f90.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:4511: AmberTools/src/netcdf-fortran-4.4.4/fortran/CMakeFiles/netcdff.dir/all] Error 2
make: *** [Makefile:152: all] Error 2
I've added the files generated from the commands I issued in the amber22_src/build directory:
./run_cmake 2>&1 | tee RunCmake.log
followed by:
make install 2>&1 | tee MakeInstall.log
If anything can be gathered from this to help me complete the installation, I'd be grateful !
Kind regards,
Nahoum Anthony
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Received on Tue May 16 2023 - 03:30:02 PDT
