[AMBER] Cluster size from independent trajectories.

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From: Daniel Hall via AMBER <amber.ambermd.org>
Date: Tue, 2 May 2023 10:02:40 +0000

Hello,

I have run three MD simulations and compared clustering algorithms k-means, hierarchical and dbscan as shown in the tutorial "Clustering a protein from multiple independent copies." I was wondering how you calculate the cluster size as shown in the table? As I have looked in the outputted files, but I cannot find this information.

Any help would be greatly appreciated.

Regards,
Dan.
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Received on Tue May 02 2023 - 03:30:02 PDT