[AMBER] tleap error

From: Prithviraj Nandigrami via AMBER <amber.ambermd.org>
Date: Tue, 21 Feb 2023 16:45:09 -0500

Dear AMBER Experts,

I am trying to prepare a solvated system using leap. I get this error in
the process:

source leaprc.RNA.OL3
loadOff terminal_monophosphate.lib
source leaprc.water.tip3p
loadamberparams input.frcmod
mod = loadMol2 input.mol2
mol = loadpdb input.pdb
check mol

It produces this error:

*FATAL: Atom .R<G5 1>.A<HO5' 37> does not have a type*

Prior to loading the input structure to leap, I used pdb4amber to process
and 'clean' the structure.

Please advise what I am doing incorrectly.

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Received on Tue Feb 21 2023 - 14:00:02 PST
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