The system is: Linux - 5.15.0-56-generic - x86_64 Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded. Compiler: /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc Build flags: -march=nocona;-mtune=haswell;-ftree-vectorize;-fPIC;-fstack-protector-strong;-fno-plt;-O2;-ffunction-sections;-pipe;-isystem;/home/rlwoltz/anaconda3/envs/AmberTools22/include Id flags: The output was: 0 Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out" The C compiler identification is GNU, found in "/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/3.22.1/CompilerIdC/a.out" Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded. Compiler: /home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ Build flags: -fvisibility-inlines-hidden;-fmessage-length=0;-march=nocona;-mtune=haswell;-ftree-vectorize;-fPIC;-fstack-protector-strong;-fno-plt;-O2;-ffunction-sections;-pipe;-isystem;/home/rlwoltz/anaconda3/envs/AmberTools22/include Id flags: The output was: 0 Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out" The CXX compiler identification is GNU, found in "/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/3.22.1/CompilerIdCXX/a.out" Compiling the Fortran compiler identification source file "CMakeFortranCompilerId.F" succeeded. Compiler: /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran Build flags: -march=nocona;-mtune=haswell;-ftree-vectorize;-fPIC;-fstack-protector-strong;-fno-plt;-O2;-ffunction-sections;-pipe;-isystem;/home/rlwoltz/anaconda3/envs/AmberTools22/include Id flags: -v The output was: 0 Driving: /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -v CMakeFortranCompilerId.F -l gfortran -l m -shared-libgcc Reading specs from /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/specs could not find specs file conda.specs COLLECT_GCC=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran COLLECT_LTO_WRAPPER=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/x86_64-conda-linux-gnu/11.3.0/lto-wrapper Target: x86_64-conda-linux-gnu Configured with: ../configure --prefix=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho --with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --mandir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/man --build=x86_64-conda-linux-gnu --host=x86_64-conda-linux-gnu --target=x86_64-conda-linux-gnu --enable-default-pie --enable-languages=c,c++,fortran,objc,obj-c++ --enable-__cxa_atexit --disable-libmudflap --enable-libgomp --disable-libssp --enable-libquadmath --enable-libquadmath-support --enable-libsanitizer --enable-lto --enable-threads=posix --enable-target-optspace --enable-plugin --enable-gold --disable-nls --disable-bootstrap --disable-multilib --enable-long-long --with-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/sysroot --with-build-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_build_env/x86_64-conda-linux-gnu/sysroot --with-gxx-include-dir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/include/c++/11.3.0 --with-pkgversion='conda-forge gcc 11.3.0-19' --with-bugurl=https://github.com/conda-forge/ctng-compilers-feedstock/issues/new/choose Thread model: posix Supported LTO compression algorithms: zlib gcc version 11.3.0 (conda-forge gcc 11.3.0-19) COLLECT_GCC_OPTIONS='-march=nocona' '-mtune=haswell' '-ftree-vectorize' '-fPIC' '-fstack-protector-strong' '-fno-plt' '-O2' '-ffunction-sections' '-pipe' '-isystem' '/home/rlwoltz/anaconda3/envs/AmberTools22/include' '-v' '-shared-libgcc' '-dumpdir' 'a-' /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/x86_64-conda-linux-gnu/11.3.0/f951 CMakeFortranCompilerId.F -ffixed-form -cpp=/tmp/ccph2zbk.f90 -quiet -v -iprefix /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/ -isysroot /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include CMakeFortranCompilerId.F -quiet -dumpdir a- -dumpbase CMakeFortranCompilerId.F -dumpbase-ext .F -march=nocona -mtune=haswell -O2 -version -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -ffunction-sections -fintrinsic-modules-path /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/finclude -o - | /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/bin/as -v --64 -o /tmp/cc1TTZr0.o GNU assembler version 2.39 (x86_64-conda-linux-gnu) using BFD version (GNU Binutils) 2.39 GNU Fortran (conda-forge gcc 11.3.0-19) version 11.3.0 (x86_64-conda-linux-gnu) compiled by GNU C version 11.3.0, GMP version 6.1.0, MPFR version 3.1.6, MPC version 1.0.3, isl version isl-0.18-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/home/rlwoltz/local/zmq/include" ignoring duplicate directory "." ignoring duplicate directory "/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/../../lib/gcc/x86_64-conda-linux-gnu/11.3.0/include" ignoring nonexistent directory "/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/local/include" ignoring duplicate directory "/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/../../lib/gcc/x86_64-conda-linux-gnu/11.3.0/include-fixed" ignoring duplicate directory "/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/../../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: /home/rlwoltz/anaconda3/envs/AmberTools22/include /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/finclude . /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/include /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/include-fixed /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/include /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/include End of search list. GNU Fortran2008 (conda-forge gcc 11.3.0-19) version 11.3.0 (x86_64-conda-linux-gnu) compiled by GNU C version 11.3.0, GMP version 6.1.0, MPFR version 3.1.6, MPC version 1.0.3, isl version isl-0.18-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Reading specs from /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib/../lib/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-march=nocona' '-mtune=haswell' '-ftree-vectorize' '-fPIC' '-fstack-protector-strong' '-fno-plt' '-O2' '-ffunction-sections' '-pipe' '-isystem' '/home/rlwoltz/anaconda3/envs/AmberTools22/include' '-v' '-shared-libgcc' '-dumpdir' 'a-' COMPILER_PATH=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/x86_64-conda-linux-gnu/11.3.0/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/bin/ LIBRARY_PATH=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib/../lib/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../lib/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/:./:./:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/ COLLECT_GCC_OPTIONS='-march=nocona' '-mtune=haswell' '-ftree-vectorize' '-fPIC' '-fstack-protector-strong' '-fno-plt' '-O2' '-ffunction-sections' '-pipe' '-isystem' '/home/rlwoltz/anaconda3/envs/AmberTools22/include' '-v' '-shared-libgcc' '-dumpdir' 'a.' /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/x86_64-conda-linux-gnu/11.3.0/collect2 -plugin /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/x86_64-conda-linux-gnu/11.3.0/liblto_plugin.so -plugin-opt=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/x86_64-conda-linux-gnu/11.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccFjMWIo.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/Scrt1.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/crti.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtbeginS.o -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0 -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib/../lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib -L. -L. -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../.. -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib /tmp/cc1TTZr0.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtendS.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/crtn.o -rpath /home/rlwoltz/anaconda3/envs/AmberTools22/lib COLLECT_GCC_OPTIONS='-march=nocona' '-mtune=haswell' '-ftree-vectorize' '-fPIC' '-fstack-protector-strong' '-fno-plt' '-O2' '-ffunction-sections' '-pipe' '-isystem' '/home/rlwoltz/anaconda3/envs/AmberTools22/include' '-v' '-shared-libgcc' '-dumpdir' 'a.' 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[/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../..] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] implicit libs: [gcc;gcc_s;c;gcc;gcc_s] implicit objs: [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/Scrt1.o;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/crti.o;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtbeginS.o;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtendS.o;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/crtn.o] implicit dirs: 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[/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../..] ==> 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[/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/crti.o] ==> obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/crti.o] arg [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtbeginS.o] ==> obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtbeginS.o] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/lib] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] arg [-L/home/rlwoltz/anaconda3/lib] ==> dir [/home/rlwoltz/anaconda3/lib] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib/../lib] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib/../lib] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../lib] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../lib] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib] arg [-L.] ==> ignore arg [-L.] ==> ignore arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../..] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../..] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib] arg [-L/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib] ==> dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib] arg [-O2] ==> ignore arg [--sort-common] ==> ignore arg [--as-needed] ==> ignore arg [-zrelro] ==> ignore arg [-znow] ==> ignore arg [--disable-new-dtags] ==> ignore arg [--gc-sections] ==> ignore arg [--allow-shlib-undefined] ==> ignore arg [-rpath] ==> ignore arg [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] ==> ignore arg [-rpath-link] ==> ignore arg [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] ==> ignore arg [-O2] ==> ignore arg [--sort-common] ==> ignore arg [--as-needed] ==> ignore arg [-zrelro] ==> ignore arg [-znow] ==> ignore arg [--disable-new-dtags] ==> ignore arg [--gc-sections] ==> ignore arg [-rpath] ==> ignore arg [/home/rlwoltz/anaconda3/lib] ==> ignore arg [-rpath-link] ==> ignore arg [/home/rlwoltz/anaconda3/lib] ==> ignore arg [CMakeFiles/cmTC_51919.dir/CMakeFortranCompilerABI.F90.o] ==> ignore arg [-lgfortran] ==> lib [gfortran] arg [-lm] ==> lib [m] arg [-lgcc_s] ==> lib [gcc_s] arg [-lgcc] ==> lib [gcc] arg [-lquadmath] ==> lib [quadmath] arg [-lm] ==> lib [m] arg [-lgcc_s] ==> lib [gcc_s] arg [-lgcc] ==> lib [gcc] arg [-lc] ==> lib [c] arg [-lgcc_s] ==> lib [gcc_s] arg [-lgcc] ==> lib [gcc] arg [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtendS.o] ==> obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtendS.o] arg [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/crtn.o] ==> obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/crtn.o] arg [-rpath] ==> ignore arg [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] ==> ignore collapse obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/Scrt1.o] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/Scrt1.o] collapse obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/crti.o] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/crti.o] collapse obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtbeginS.o] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtbeginS.o] collapse obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtendS.o] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtendS.o] collapse obj [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/crtn.o] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/crtn.o] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] collapse library dir [/home/rlwoltz/anaconda3/lib] ==> [/home/rlwoltz/anaconda3/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../..] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] implicit libs: [gfortran;m;gcc_s;gcc;quadmath;m;gcc_s;gcc;c;gcc_s;gcc] implicit objs: [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/Scrt1.o;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/crti.o;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtbeginS.o;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0/crtendS.o;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/crtn.o] implicit dirs: [/home/rlwoltz/anaconda3/envs/AmberTools22/lib;/home/rlwoltz/anaconda3/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] implicit fwks: [] Determining if the function dlopen exists in the dl passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_dfe96/fast && /usr/bin/gmake -f CMakeFiles/cmTC_dfe96.dir/build.make CMakeFiles/cmTC_dfe96.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_dfe96.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=dlopen -std=gnu99 -o CMakeFiles/cmTC_dfe96.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_dfe96 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_dfe96.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=dlopen -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_dfe96.dir/CheckFunctionExists.c.o -o cmTC_dfe96 -ldl gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function XOpenDisplay exists in the /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libX11.so;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/libXext.so passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_febe1/fast && /usr/bin/gmake -f CMakeFiles/cmTC_febe1.dir/build.make CMakeFiles/cmTC_febe1.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_febe1.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=XOpenDisplay -std=gnu99 -o CMakeFiles/cmTC_febe1.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_febe1 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_febe1.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=XOpenDisplay -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_febe1.dir/CheckFunctionExists.c.o -o cmTC_febe1 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libX11.so /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libXext.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function gethostbyname exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_29eaa/fast && /usr/bin/gmake -f CMakeFiles/cmTC_29eaa.dir/build.make CMakeFiles/cmTC_29eaa.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_29eaa.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=gethostbyname -std=gnu99 -o CMakeFiles/cmTC_29eaa.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_29eaa /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_29eaa.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=gethostbyname -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_29eaa.dir/CheckFunctionExists.c.o -o cmTC_29eaa gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function connect exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_8c859/fast && /usr/bin/gmake -f CMakeFiles/cmTC_8c859.dir/build.make CMakeFiles/cmTC_8c859.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_8c859.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=connect -std=gnu99 -o CMakeFiles/cmTC_8c859.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_8c859 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_8c859.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=connect -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_8c859.dir/CheckFunctionExists.c.o -o cmTC_8c859 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function remove exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_e3d8f/fast && /usr/bin/gmake -f CMakeFiles/cmTC_e3d8f.dir/build.make CMakeFiles/cmTC_e3d8f.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_e3d8f.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=remove -std=gnu99 -o CMakeFiles/cmTC_e3d8f.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_e3d8f 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'/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function shmat exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_8f03d/fast && /usr/bin/gmake -f CMakeFiles/cmTC_8f03d.dir/build.make CMakeFiles/cmTC_8f03d.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_8f03d.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=shmat -std=gnu99 -o CMakeFiles/cmTC_8f03d.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_8f03d /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_8f03d.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=shmat -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_8f03d.dir/CheckFunctionExists.c.o -o cmTC_8f03d gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function IceConnectionNumber exists in the ICE passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_6a7c3/fast && /usr/bin/gmake -f CMakeFiles/cmTC_6a7c3.dir/build.make CMakeFiles/cmTC_6a7c3.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_6a7c3.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=IceConnectionNumber -std=gnu99 -o CMakeFiles/cmTC_6a7c3.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_6a7c3 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_6a7c3.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=IceConnectionNumber -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_6a7c3.dir/CheckFunctionExists.c.o -o cmTC_6a7c3 -lICE gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file pthread.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_47943/fast && /usr/bin/gmake -f CMakeFiles/cmTC_47943.dir/build.make CMakeFiles/cmTC_47943.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_47943.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -std=gnu99 -o CMakeFiles/cmTC_47943.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_47943 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_47943.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_47943.dir/CheckIncludeFile.c.o -o cmTC_47943 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function pthread_create exists in the pthread passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_2321a/fast && /usr/bin/gmake -f CMakeFiles/cmTC_2321a.dir/build.make CMakeFiles/cmTC_2321a.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_2321a.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=pthread_create -std=gnu99 -o CMakeFiles/cmTC_2321a.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_2321a /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2321a.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DCHECK_FUNCTION_EXISTS=pthread_create -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_2321a.dir/CheckFunctionExists.c.o -o cmTC_2321a -lpthread gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file complex.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_a0981/fast && /usr/bin/gmake -f CMakeFiles/cmTC_a0981.dir/build.make CMakeFiles/cmTC_a0981.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_a0981.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -std=gnu99 -o CMakeFiles/cmTC_a0981.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_a0981 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_a0981.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_a0981.dir/CheckIncludeFile.c.o -o cmTC_a0981 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function rl_initialize exists in libreadline.so passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_3c9ad/fast && /usr/bin/gmake -f CMakeFiles/cmTC_3c9ad.dir/build.make CMakeFiles/cmTC_3c9ad.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_3c9ad.dir/TryLinkLibrary.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -std=gnu99 -o CMakeFiles/cmTC_3c9ad.dir/TryLinkLibrary.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/TryLinkLibrary.c Linking C executable cmTC_3c9ad /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_3c9ad.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_3c9ad.dir/TryLinkLibrary.c.o -o cmTC_3c9ad /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libreadline.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Detecting C OpenMP compiler ABI info compiled with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_15167/fast && /usr/bin/gmake -f CMakeFiles/cmTC_15167.dir/build.make CMakeFiles/cmTC_15167.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_15167.dir/OpenMPTryFlag.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fopenmp -v -fPIE -std=gnu99 -o CMakeFiles/cmTC_15167.dir/OpenMPTryFlag.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/FindOpenMP/OpenMPTryFlag.c Reading specs from /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/specs could not find specs file conda.specs COLLECT_GCC=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc Target: x86_64-conda-linux-gnu Configured with: ../configure 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[/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../..] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib] collapse library dir [/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib] ==> [/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] implicit libs: [gomp;gcc;gcc_s;pthread;c;gcc;gcc_s] implicit objs: [] implicit dirs: 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--with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --mandir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/man --build=x86_64-conda-linux-gnu --host=x86_64-conda-linux-gnu --target=x86_64-conda-linux-gnu --enable-default-pie --enable-languages=c,c++,fortran,objc,obj-c++ --enable-__cxa_atexit --disable-libmudflap --enable-libgomp --disable-libssp --enable-libquadmath --enable-libquadmath-support --enable-libsanitizer --enable-lto --enable-threads=posix --enable-target-optspace --enable-plugin --enable-gold --disable-nls --disable-bootstrap --disable-multilib --enable-long-long --with-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/sysroot --with-build-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_build_env/x86_64-conda-linux-gnu/sysroot 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GNU C++11 (conda-forge gcc 11.3.0-19) version 11.3.0 (x86_64-conda-linux-gnu) compiled by GNU C version 11.3.0, GMP version 6.1.0, MPFR version 3.1.6, MPC version 1.0.3, isl version isl-0.18-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 8b8f4c19bc68af339a806b8e9634f284 COMPILER_PATH=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/x86_64-conda-linux-gnu/11.3.0/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/:/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/../../../../x86_64-conda-linux-gnu/bin/ 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COLLECT_GCC_OPTIONS='-fvisibility-inlines-hidden' '-fmessage-length=0' '-march=nocona' '-mtune=haswell' '-ftree-vectorize' '-fstack-protector-strong' '-fno-plt' '-O2' '-ffunction-sections' '-pipe' '-isystem' '/home/rlwoltz/anaconda3/envs/AmberTools22/include' '-fopenmp' '-v' '-fPIE' '-std=gnu++11' '-o' 'CMakeFiles/cmTC_9e5d6.dir/OpenMPTryFlag.cpp.o' '-c' '-shared-libgcc' '-pthread' '-dumpdir' 'CMakeFiles/cmTC_9e5d6.dir/OpenMPTryFlag.cpp.' Linking CXX executable cmTC_9e5d6 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_9e5d6.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fopenmp -v -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_9e5d6.dir/OpenMPTryFlag.cpp.o -o cmTC_9e5d6 Reading specs from /home/rlwoltz/anaconda3/envs/AmberTools22/bin/../lib/gcc/x86_64-conda-linux-gnu/11.3.0/specs could not find specs file conda.specs COLLECT_GCC=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ COLLECT_LTO_WRAPPER=/home/rlwoltz/anaconda3/envs/AmberTools22/bin/../libexec/gcc/x86_64-conda-linux-gnu/11.3.0/lto-wrapper Target: x86_64-conda-linux-gnu Configured with: ../configure --prefix=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho --with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib 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[/home/rlwoltz/anaconda3/envs/AmberTools22/lib;/home/rlwoltz/anaconda3/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] implicit fwks: [] Detecting Fortran OpenMP compiler ABI info compiled with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_f2be8/fast && /usr/bin/gmake -f CMakeFiles/cmTC_f2be8.dir/build.make CMakeFiles/cmTC_f2be8.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_f2be8.dir/OpenMPTryFlag.f90.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran 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--with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --mandir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1666516804387/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/man --build=x86_64-conda-linux-gnu --host=x86_64-conda-linux-gnu --target=x86_64-conda-linux-gnu --enable-default-pie --enable-languages=c,c++,fortran,objc,obj-c++ --enable-__cxa_atexit 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[gfortran;m;gomp;gcc_s;gcc;quadmath;m;gcc_s;gcc;pthread;c;gcc_s;gcc] implicit objs: [] implicit dirs: [/home/rlwoltz/anaconda3/envs/AmberTools22/lib;/home/rlwoltz/anaconda3/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc/x86_64-conda-linux-gnu/11.3.0;/home/rlwoltz/anaconda3/envs/AmberTools22/lib/gcc;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/lib;/home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib] implicit fwks: [] Performing C SOURCE FILE Test SUPPORTS_NO_AS_NEEDED succeeded with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_285f4/fast && /usr/bin/gmake -f CMakeFiles/cmTC_285f4.dir/build.make CMakeFiles/cmTC_285f4.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_285f4.dir/src.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -DSUPPORTS_NO_AS_NEEDED -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,--no-as-needed -fPIE -std=gnu99 -o CMakeFiles/cmTC_285f4.dir/src.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/src.c Linking C executable cmTC_285f4 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_285f4.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,--no-as-needed -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_285f4.dir/src.c.o -o cmTC_285f4 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Source file was: int main(void) { return 0; } Performing C SOURCE FILE Test CMath_LINKS_WITH_M succeeded with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_a88c6/fast && /usr/bin/gmake -f CMakeFiles/cmTC_a88c6.dir/build.make CMakeFiles/cmTC_a88c6.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_a88c6.dir/src.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -DCMath_LINKS_WITH_M -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -std=gnu99 -o CMakeFiles/cmTC_a88c6.dir/src.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/src.c Linking C executable cmTC_a88c6 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_a88c6.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_a88c6.dir/src.c.o -o cmTC_a88c6 /home/rlwoltz/anaconda3/envs/AmberTools22/x86_64-conda-linux-gnu/sysroot/usr/lib/libm.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Source file was: #include int main(int argc, char** argv) { return sin(argc - 1); } Determining if the function fftw_execute exists in libfftw3.so passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_e12d4/fast && /usr/bin/gmake -f CMakeFiles/cmTC_e12d4.dir/build.make CMakeFiles/cmTC_e12d4.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_e12d4.dir/TryLinkLibrary.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -std=gnu99 -o CMakeFiles/cmTC_e12d4.dir/TryLinkLibrary.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/TryLinkLibrary.c Linking C executable cmTC_e12d4 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_e12d4.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_e12d4.dir/TryLinkLibrary.c.o -o cmTC_e12d4 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libfftw3.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function fftw_cleanup exists in libfftw3.so passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_eebe8/fast && /usr/bin/gmake -f CMakeFiles/cmTC_eebe8.dir/build.make CMakeFiles/cmTC_eebe8.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_eebe8.dir/TryLinkLibrary.F90.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -I/home/rlwoltz/anaconda3/envs/AmberTools22/include/../include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/TryLinkLibrary.F90 -o CMakeFiles/cmTC_eebe8.dir/TryLinkLibrary.F90.o Linking Fortran executable cmTC_eebe8 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_eebe8.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include CMakeFiles/cmTC_eebe8.dir/TryLinkLibrary.F90.o -o cmTC_eebe8 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libfftw3.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function nc_strerror exists in the netcdf passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_c4de3/fast && /usr/bin/gmake -f 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-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_c4de3.dir/CheckFunctionExists.c.o -o cmTC_c4de3 -lnetcdf gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Performing Fortran SOURCE FILE Test NetCDF_F90_WORKS succeeded with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_2a02d/fast && /usr/bin/gmake -f CMakeFiles/cmTC_2a02d.dir/build.make CMakeFiles/cmTC_2a02d.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_2a02d.dir/src.F90.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DNetCDF_F90_WORKS -fPIE -I/home/rlwoltz/anaconda3/envs/AmberTools22/include -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/src.F90 -o CMakeFiles/cmTC_2a02d.dir/src.F90.o Linking Fortran executable cmTC_2a02d /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2a02d.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -DNetCDF_F90_WORKS CMakeFiles/cmTC_2a02d.dir/src.F90.o -o cmTC_2a02d /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libnetcdff.so /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libnetcdff.so /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libnetcdf.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Return value: TRUE Source file was: program testf use netcdf write(6,*) nf90_strerror(0) write(6,*) 'testing a Fortran program' end program testf Determining if the function BLAS_dgemm_x exists in libxblas-amb.a passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_81532/fast && /usr/bin/gmake -f CMakeFiles/cmTC_81532.dir/build.make CMakeFiles/cmTC_81532.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_81532.dir/TryLinkLibrary.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -std=gnu99 -o CMakeFiles/cmTC_81532.dir/TryLinkLibrary.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/TryLinkLibrary.c Linking C executable cmTC_81532 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_81532.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_81532.dir/TryLinkLibrary.c.o -o cmTC_81532 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libxblas-amb.a gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function BLAS_dgemm_x exists in libxblas-amb.a passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_da222/fast && /usr/bin/gmake -f CMakeFiles/cmTC_da222.dir/build.make CMakeFiles/cmTC_da222.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_da222.dir/TryLinkLibrary.F90.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/TryLinkLibrary.F90 -o CMakeFiles/cmTC_da222.dir/TryLinkLibrary.F90.o Linking Fortran executable cmTC_da222 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_da222.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include CMakeFiles/cmTC_da222.dir/TryLinkLibrary.F90.o -o cmTC_da222 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libxblas-amb.a gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the Fortran sgemm exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_0a044/fast && /usr/bin/gmake -f CMakeFiles/cmTC_0a044.dir/build.make CMakeFiles/cmTC_0a044.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_0a044.dir/testFortranCompiler.f.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_0a044.dir/testFortranCompiler.f.o Linking Fortran executable cmTC_0a044 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_0a044.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include CMakeFiles/cmTC_0a044.dir/testFortranCompiler.f.o -o cmTC_0a044 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libblas.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the Fortran cheev exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_ce462/fast && /usr/bin/gmake -f CMakeFiles/cmTC_ce462.dir/build.make CMakeFiles/cmTC_ce462.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_ce462.dir/testFortranCompiler.f.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_ce462.dir/testFortranCompiler.f.o Linking Fortran executable cmTC_ce462 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_ce462.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include CMakeFiles/cmTC_ce462.dir/testFortranCompiler.f.o -o cmTC_ce462 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/liblapack.so /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libblas.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function dsaupd exists in libarpack.so passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_55ed1/fast && /usr/bin/gmake -f CMakeFiles/cmTC_55ed1.dir/build.make CMakeFiles/cmTC_55ed1.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_55ed1.dir/TryLinkLibrary.F90.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/TryLinkLibrary.F90 -o CMakeFiles/cmTC_55ed1.dir/TryLinkLibrary.F90.o Linking Fortran executable cmTC_55ed1 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_55ed1.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gfortran -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include CMakeFiles/cmTC_55ed1.dir/TryLinkLibrary.F90.o -o cmTC_55ed1 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libarpack.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the BZ2_bzCompressInit exist passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_68a1f/fast && /usr/bin/gmake -f CMakeFiles/cmTC_68a1f.dir/build.make CMakeFiles/cmTC_68a1f.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_68a1f.dir/CheckSymbolExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -std=gnu99 -o CMakeFiles/cmTC_68a1f.dir/CheckSymbolExists.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c Linking C executable cmTC_68a1f /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_68a1f.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_68a1f.dir/CheckSymbolExists.c.o -o cmTC_68a1f /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libbz2.so gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' File /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: /* */ #include int main(int argc, char** argv) { (void)argv; #ifndef BZ2_bzCompressInit return ((int*)(&BZ2_bzCompressInit))[argc]; #else (void)argc; return 0; #endif } Determining if the function boost::system::system_error() exists in -lpthread libboost_thread.so.1.74.0 libboost_system.so.1.74.0 libboost_program_options.so.1.74.0 libboost_iostreams.so.1.74.0 libboost_regex.so.1.74.0 libboost_chrono.so.1.74.0 libboost_timer.so.1.74.0 libboost_chrono.so.1.74.0 libboost_filesystem.so.1.74.0 libboost_regex.so.1.74.0 libboost_graph.so.1.74.0 passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_ae7d8/fast && /usr/bin/gmake -f CMakeFiles/cmTC_ae7d8.dir/build.make CMakeFiles/cmTC_ae7d8.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_ae7d8.dir/TryLinkLibrary.cpp.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -std=gnu++11 -o CMakeFiles/cmTC_ae7d8.dir/TryLinkLibrary.cpp.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/TryLinkLibrary.cpp Linking CXX executable cmTC_ae7d8 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_ae7d8.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_ae7d8.dir/TryLinkLibrary.cpp.o -o cmTC_ae7d8 -lpthread /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_thread.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_system.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_program_options.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_iostreams.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_regex.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_chrono.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_timer.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_chrono.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_filesystem.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_regex.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_graph.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_chrono.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_timer.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_filesystem.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_graph.so.1.74.0 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function boost::iostreams::bzip2_decompressor() and boost::iostreams::gzip_decompressor() exists in -lpthread libboost_thread.so.1.74.0 libboost_system.so.1.74.0 libboost_program_options.so.1.74.0 libboost_iostreams.so.1.74.0 libboost_regex.so.1.74.0 libboost_chrono.so.1.74.0 libboost_timer.so.1.74.0 libboost_chrono.so.1.74.0 libboost_filesystem.so.1.74.0 libboost_regex.so.1.74.0 libboost_graph.so.1.74.0 passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_80ff3/fast && /usr/bin/gmake -f CMakeFiles/cmTC_80ff3.dir/build.make CMakeFiles/cmTC_80ff3.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_80ff3.dir/TryLinkLibrary.cpp.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -fPIE -std=gnu++11 -o CMakeFiles/cmTC_80ff3.dir/TryLinkLibrary.cpp.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/TryLinkLibrary.cpp Linking CXX executable cmTC_80ff3 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_80ff3.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_80ff3.dir/TryLinkLibrary.cpp.o -o cmTC_80ff3 -lpthread /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_thread.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_system.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_program_options.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_iostreams.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_regex.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_chrono.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_timer.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_chrono.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_filesystem.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_regex.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_graph.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_chrono.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_timer.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_filesystem.so.1.74.0 /home/rlwoltz/anaconda3/envs/AmberTools22/lib/libboost_graph.so.1.74.0 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Performing C++ SOURCE FILE Test SUPPORTS_WNO_UNUSED_LOCAL_TYPEDEFS succeeded with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_7f8fe/fast && /usr/bin/gmake -f CMakeFiles/cmTC_7f8fe.dir/build.make CMakeFiles/cmTC_7f8fe.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_7f8fe.dir/src.cxx.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ -DSUPPORTS_WNO_UNUSED_LOCAL_TYPEDEFS -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-local-typedefs -std=gnu++11 -o CMakeFiles/cmTC_7f8fe.dir/src.cxx.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/src.cxx Linking CXX executable cmTC_7f8fe /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_7f8fe.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/g++ -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_7f8fe.dir/src.cxx.o -o cmTC_7f8fe gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Source file was: int main() { return 0; } Determining if the mkstemp exist passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_3e558/fast && /usr/bin/gmake -f CMakeFiles/cmTC_3e558.dir/build.make CMakeFiles/cmTC_3e558.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_3e558.dir/CheckSymbolExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_3e558.dir/CheckSymbolExists.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c Linking C executable cmTC_3e558 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_3e558.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_3e558.dir/CheckSymbolExists.c.o -o cmTC_3e558 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' File /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: /* */ #include int main(int argc, char** argv) { (void)argv; #ifndef mkstemp return ((int*)(&mkstemp))[argc]; #else (void)argc; return 0; #endif } Determining if the include file inttypes.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_c90aa/fast && /usr/bin/gmake -f CMakeFiles/cmTC_c90aa.dir/build.make CMakeFiles/cmTC_c90aa.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_c90aa.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_c90aa.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_c90aa /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_c90aa.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_c90aa.dir/CheckIncludeFile.c.o -o cmTC_c90aa gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function sscanf exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_aeb45/fast && /usr/bin/gmake -f CMakeFiles/cmTC_aeb45.dir/build.make CMakeFiles/cmTC_aeb45.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_aeb45.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -DCHECK_FUNCTION_EXISTS=sscanf -std=gnu99 -o CMakeFiles/cmTC_aeb45.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c : warning: conflicting types for built-in function 'sscanf'; expected 'int(const char *, const char *, ...)' [-Wbuiltin-declaration-mismatch] /usr/share/cmake-3.22/Modules/CheckFunctionExists.c:7:3: note: in expansion of macro 'CHECK_FUNCTION_EXISTS' 7 | CHECK_FUNCTION_EXISTS(void); | ^~~~~~~~~~~~~~~~~~~~~ /usr/share/cmake-3.22/Modules/CheckFunctionExists.c:1:1: note: 'sscanf' is declared in header '' +++ |+#include 1 | #ifdef CHECK_FUNCTION_EXISTS Linking C executable cmTC_aeb45 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_aeb45.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -DCHECK_FUNCTION_EXISTS=sscanf -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_aeb45.dir/CheckFunctionExists.c.o -o cmTC_aeb45 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function stat exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_e0a69/fast && /usr/bin/gmake -f CMakeFiles/cmTC_e0a69.dir/build.make CMakeFiles/cmTC_e0a69.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_e0a69.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -DCHECK_FUNCTION_EXISTS=stat -std=gnu99 -o CMakeFiles/cmTC_e0a69.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_e0a69 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_e0a69.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -DCHECK_FUNCTION_EXISTS=stat -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_e0a69.dir/CheckFunctionExists.c.o -o cmTC_e0a69 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file sys/types.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_f4a16/fast && /usr/bin/gmake -f CMakeFiles/cmTC_f4a16.dir/build.make CMakeFiles/cmTC_f4a16.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_f4a16.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_f4a16.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_f4a16 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_f4a16.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_f4a16.dir/CheckIncludeFile.c.o -o cmTC_f4a16 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file stdint.h exists passed with the following output: Change Dir: 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/home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_38772.dir/CheckIncludeFile.c.o -o cmTC_38772 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file stddef.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_f27f1/fast && /usr/bin/gmake -f CMakeFiles/cmTC_f27f1.dir/build.make CMakeFiles/cmTC_f27f1.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_f27f1.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_f27f1.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_f27f1 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_f27f1.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_f27f1.dir/CheckIncludeFile.c.o -o cmTC_f27f1 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining size of long double passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_15901/fast && /usr/bin/gmake -f CMakeFiles/cmTC_15901.dir/build.make CMakeFiles/cmTC_15901.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_15901.dir/SIZEOF_LONG_DOUBLE.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_15901.dir/SIZEOF_LONG_DOUBLE.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CheckTypeSize/SIZEOF_LONG_DOUBLE.c Linking C executable cmTC_15901 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_15901.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_15901.dir/SIZEOF_LONG_DOUBLE.c.o -o cmTC_15901 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the function getline exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_e700a/fast && /usr/bin/gmake -f CMakeFiles/cmTC_e700a.dir/build.make CMakeFiles/cmTC_e700a.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_e700a.dir/CheckFunctionExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -DCHECK_FUNCTION_EXISTS=getline -std=gnu99 -o CMakeFiles/cmTC_e700a.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.22/Modules/CheckFunctionExists.c Linking C executable cmTC_e700a /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_e700a.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -DCHECK_FUNCTION_EXISTS=getline -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_e700a.dir/CheckFunctionExists.c.o -o cmTC_e700a gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Performing C SOURCE FILE Test SUPPORTS_WNO_UNUSED_RESULT succeeded with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_18f1c/fast && /usr/bin/gmake -f CMakeFiles/cmTC_18f1c.dir/build.make CMakeFiles/cmTC_18f1c.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_18f1c.dir/src.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -DSUPPORTS_WNO_UNUSED_RESULT -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wno-unused-result -std=gnu99 -o CMakeFiles/cmTC_18f1c.dir/src.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/src.c Linking C executable cmTC_18f1c /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_18f1c.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_18f1c.dir/src.c.o -o cmTC_18f1c gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Source file was: int main(void) { return 0; } Determining if the backtrace exist passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_5d641/fast && /usr/bin/gmake -f CMakeFiles/cmTC_5d641.dir/build.make CMakeFiles/cmTC_5d641.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_5d641.dir/CheckSymbolExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_5d641.dir/CheckSymbolExists.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c Linking C executable cmTC_5d641 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_5d641.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_5d641.dir/CheckSymbolExists.c.o -o cmTC_5d641 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' File /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: /* */ #include int main(int argc, char** argv) { (void)argv; #ifndef backtrace return ((int*)(&backtrace))[argc]; #else (void)argc; return 0; #endif } Determining if the include file getopt.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_92471/fast && /usr/bin/gmake -f CMakeFiles/cmTC_92471.dir/build.make CMakeFiles/cmTC_92471.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_92471.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_92471.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_92471 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_92471.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_92471.dir/CheckIncludeFile.c.o -o cmTC_92471 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file sys/param.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_be08b/fast && /usr/bin/gmake -f CMakeFiles/cmTC_be08b.dir/build.make CMakeFiles/cmTC_be08b.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_be08b.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_be08b.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_be08b /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_be08b.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_be08b.dir/CheckIncludeFile.c.o -o cmTC_be08b gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file sys/dir.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_42bd8/fast && /usr/bin/gmake -f CMakeFiles/cmTC_42bd8.dir/build.make CMakeFiles/cmTC_42bd8.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_42bd8.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_42bd8.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_42bd8 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_42bd8.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_42bd8.dir/CheckIncludeFile.c.o -o cmTC_42bd8 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file dirent.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_e628a/fast && /usr/bin/gmake -f CMakeFiles/cmTC_e628a.dir/build.make CMakeFiles/cmTC_e628a.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_e628a.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_e628a.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_e628a /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_e628a.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_e628a.dir/CheckIncludeFile.c.o -o cmTC_e628a gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file string.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_7a605/fast && /usr/bin/gmake -f CMakeFiles/cmTC_7a605.dir/build.make CMakeFiles/cmTC_7a605.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_7a605.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_7a605.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_7a605 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_7a605.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_7a605.dir/CheckIncludeFile.c.o -o cmTC_7a605 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file strings.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_733dc/fast && /usr/bin/gmake -f CMakeFiles/cmTC_733dc.dir/build.make CMakeFiles/cmTC_733dc.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_733dc.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_733dc.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_733dc /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_733dc.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_733dc.dir/CheckIncludeFile.c.o -o cmTC_733dc gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file pwd.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_8a13d/fast && /usr/bin/gmake -f CMakeFiles/cmTC_8a13d.dir/build.make CMakeFiles/cmTC_8a13d.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_8a13d.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_8a13d.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_8a13d /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_8a13d.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_8a13d.dir/CheckIncludeFile.c.o -o cmTC_8a13d gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file stdbool.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_2efe8/fast && /usr/bin/gmake -f CMakeFiles/cmTC_2efe8.dir/build.make CMakeFiles/cmTC_2efe8.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_2efe8.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_2efe8.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_2efe8 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2efe8.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_2efe8.dir/CheckIncludeFile.c.o -o cmTC_2efe8 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file sys/time.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_140cf/fast && /usr/bin/gmake -f CMakeFiles/cmTC_140cf.dir/build.make CMakeFiles/cmTC_140cf.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_140cf.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_140cf.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_140cf /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_140cf.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_140cf.dir/CheckIncludeFile.c.o -o cmTC_140cf gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the include file X11/Xmd.h exists passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_fd32c/fast && /usr/bin/gmake -f CMakeFiles/cmTC_fd32c.dir/build.make CMakeFiles/cmTC_fd32c.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_fd32c.dir/CheckIncludeFile.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_fd32c.dir/CheckIncludeFile.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c Linking C executable cmTC_fd32c /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_fd32c.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_fd32c.dir/CheckIncludeFile.c.o -o cmTC_fd32c gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining if the toupper exist passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_8eba8/fast && /usr/bin/gmake -f CMakeFiles/cmTC_8eba8.dir/build.make CMakeFiles/cmTC_8eba8.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_8eba8.dir/CheckSymbolExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_8eba8.dir/CheckSymbolExists.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c Linking C executable cmTC_8eba8 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_8eba8.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_8eba8.dir/CheckSymbolExists.c.o -o cmTC_8eba8 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' File /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: /* */ #include int main(int argc, char** argv) { (void)argv; #ifndef toupper return ((int*)(&toupper))[argc]; #else (void)argc; return 0; #endif } Determining if the tolower exist passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_90703/fast && /usr/bin/gmake -f CMakeFiles/cmTC_90703.dir/build.make CMakeFiles/cmTC_90703.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_90703.dir/CheckSymbolExists.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_90703.dir/CheckSymbolExists.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c Linking C executable cmTC_90703 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_90703.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_90703.dir/CheckSymbolExists.c.o -o cmTC_90703 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' File /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: /* */ #include int main(int argc, char** argv) { (void)argv; #ifndef tolower return ((int*)(&tolower))[argc]; #else (void)argc; return 0; #endif } Determining size of BOOL passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_9bcde/fast && /usr/bin/gmake -f CMakeFiles/cmTC_9bcde.dir/build.make CMakeFiles/cmTC_9bcde.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_9bcde.dir/SIZEOF_BOOL.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_9bcde.dir/SIZEOF_BOOL.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CheckTypeSize/SIZEOF_BOOL.c Linking C executable cmTC_9bcde /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_9bcde.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_9bcde.dir/SIZEOF_BOOL.c.o -o cmTC_9bcde gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Determining size of _Bool passed with the following output: Change Dir: /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_acc68/fast && /usr/bin/gmake -f CMakeFiles/cmTC_acc68.dir/build.make CMakeFiles/cmTC_acc68.dir/build gmake[1]: Entering directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_acc68.dir/SIZEOF__BOOL.c.o /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -std=gnu99 -o CMakeFiles/cmTC_acc68.dir/SIZEOF__BOOL.c.o -c /home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CheckTypeSize/SIZEOF__BOOL.c Linking C executable cmTC_acc68 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_acc68.dir/link.txt --verbose=1 /home/rlwoltz/anaconda3/envs/AmberTools22/bin/gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rlwoltz/anaconda3/envs/AmberTools22/include -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -fcommon -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/envs/AmberTools22/lib -L/home/rlwoltz/anaconda3/envs/AmberTools22/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/rlwoltz/anaconda3/lib -Wl,-rpath-link,/home/rlwoltz/anaconda3/lib -L/home/rlwoltz/anaconda3/lib CMakeFiles/cmTC_acc68.dir/SIZEOF__BOOL.c.o -o cmTC_acc68 gmake[1]: Leaving directory '/home/rlwoltz/protein_modeling/amber22_src/build/CMakeFiles/CMakeTmp'