Amber Archive Nov 2022 by thread
203 messages
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Starting
Mon Oct 31 2022 - 23:00:02 PDT,
Ending
Wed Nov 30 2022 - 15:00:02 PST
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Re: [AMBER] Amber22 GPU installation fails while building NVCC object `pmemd_xray_cuda_generated_BulkMaskGPU.cu.o`
Nitin Kulhar via AMBER
(Mon Oct 31 2022 - 22:50:18 PDT)
[AMBER] Free Energy Calculation using TI
Suguna Sakkiah via AMBER
(Tue Nov 01 2022 - 20:04:13 PDT)
[AMBER] Query regarding AMBER tutorial Replica Exchange
Munazzah Fatima Ansari via AMBER
(Tue Nov 01 2022 - 22:47:12 PDT)
Re: [AMBER] Query regarding AMBER tutorial Replica Exchange
David A Case via AMBER
(Wed Nov 02 2022 - 05:56:35 PDT)
[AMBER] Do RTX 3080Ti video cards supported by the amber20?
Wei Jiao via AMBER
(Wed Nov 02 2022 - 00:13:40 PDT)
Re: [AMBER] Do RTX 3080Ti video cards supported by the amber20?
David A Case via AMBER
(Fri Nov 04 2022 - 07:44:09 PDT)
[AMBER] Do RTX 3080Ti video cards supported by the amber20?
Alessandro Contini via AMBER
(Fri Nov 04 2022 - 07:48:56 PDT)
[AMBER] Compiling Amber on Apple Silicon M2?
David A Case via AMBER
(Wed Nov 02 2022 - 06:13:18 PDT)
[AMBER] counting number of ions within cutoff region
angad sharma via AMBER
(Wed Nov 02 2022 - 07:27:43 PDT)
[AMBER] about mmgbsa method
laura zhang via AMBER
(Wed Nov 02 2022 - 08:19:29 PDT)
Re: [AMBER] about mmgbsa method
Dr. Anselm Horn via AMBER
(Wed Nov 02 2022 - 08:41:06 PDT)
Re: [AMBER] about mmgbsa method
laura zhang via AMBER
(Wed Nov 02 2022 - 13:39:10 PDT)
Re: [AMBER] about mmgbsa method
Dr. Anselm Horn via AMBER
(Fri Nov 04 2022 - 01:41:29 PDT)
Re: [AMBER] AMBER20 GPU error
Prithviraj Nandigrami via AMBER
(Wed Nov 02 2022 - 18:50:55 PDT)
Re: [AMBER] AMBER20 GPU error
Thomas Cheatham via AMBER
(Wed Nov 02 2022 - 19:15:44 PDT)
Re: [AMBER] AMBER20 GPU error
Prithviraj Nandigrami via AMBER
(Thu Nov 03 2022 - 14:42:15 PDT)
Re: [AMBER] AMBER20 GPU error
Thomas Cheatham via AMBER
(Thu Nov 03 2022 - 15:17:59 PDT)
Re: [AMBER] AMBER20 GPU error
Prithviraj Nandigrami via AMBER
(Fri Nov 04 2022 - 16:22:31 PDT)
Re: [AMBER] AMBER20 GPU error
Thomas Cheatham via AMBER
(Fri Nov 04 2022 - 16:30:42 PDT)
Re: [AMBER] AMBER20 GPU error
Prithviraj Nandigrami via AMBER
(Sat Nov 05 2022 - 11:01:44 PDT)
Re: [AMBER] AMBER20 GPU error
Prithviraj Nandigrami via AMBER
(Tue Nov 08 2022 - 15:01:18 PST)
Re: [AMBER] AMBER20 GPU error
David A Case via AMBER
(Wed Nov 09 2022 - 07:54:13 PST)
Re: [AMBER] AMBER20 GPU error
Thomas Cheatham via AMBER
(Wed Nov 09 2022 - 20:24:20 PST)
Re: [AMBER] AMBER20 GPU error
Prithviraj Nandigrami via AMBER
(Fri Nov 11 2022 - 08:55:11 PST)
Re: [AMBER] AMBER20 GPU error
Carlos Simmerling via AMBER
(Fri Nov 11 2022 - 09:38:34 PST)
Re: [AMBER] AMBER20 GPU error
David A Case via AMBER
(Sat Nov 12 2022 - 07:08:40 PST)
Re: [AMBER] AMBER20 GPU error
Prithviraj Nandigrami via AMBER
(Fri Nov 18 2022 - 11:44:16 PST)
[AMBER] Announcement: Atomic Simulation Center Symposium 2022, Nov 28/29
Dr. Anselm Horn via AMBER
(Thu Nov 10 2022 - 05:36:25 PST)
Re: [AMBER] AMBER20 GPU error
Thomas Cheatham via AMBER
(Fri Nov 11 2022 - 09:46:48 PST)
[AMBER] question on mmgbsa energy calculation
laura zhang via AMBER
(Thu Nov 03 2022 - 06:53:37 PDT)
Re: [AMBER] question on mmgbsa energy calculation
Bill Miller III via AMBER
(Thu Nov 03 2022 - 07:04:35 PDT)
[AMBER] Settings for CHAMM FF?
Matthew Guberman-Pfeffer via AMBER
(Thu Nov 03 2022 - 14:57:18 PDT)
Re: [AMBER] Settings for CHAMM FF?
Carlos Simmerling via AMBER
(Thu Nov 03 2022 - 15:05:35 PDT)
[AMBER] Installation of amber18 on on parallel CPU
Dulal Mondal via AMBER
(Thu Nov 03 2022 - 22:04:28 PDT)
Re: [AMBER] Installation of amber18 on on parallel CPU
David A Case via AMBER
(Fri Nov 04 2022 - 07:42:20 PDT)
[AMBER] compile AMBER 22 with non-default gcc
Vlad Cojocaru via AMBER
(Fri Nov 04 2022 - 16:08:11 PDT)
Re: [AMBER] compile AMBER 22 with non-default gcc
Scott Brozell via AMBER
(Fri Nov 04 2022 - 23:17:20 PDT)
Re: [AMBER] compile AMBER 22 with non-default gcc
David A Case via AMBER
(Sat Nov 05 2022 - 07:48:27 PDT)
Re: [AMBER] compile AMBER 22 with non-default gcc
Vlad Cojocaru via AMBER
(Sat Nov 05 2022 - 12:23:50 PDT)
[AMBER] Metal center created with MCPB.py collapses on MD start?
Gustavo Seabra via AMBER
(Fri Nov 04 2022 - 19:06:39 PDT)
Re: [AMBER] Metal center created with MCPB.py collapses on MD start?
Clorice Reinhardt via AMBER
(Tue Nov 08 2022 - 06:38:44 PST)
Re: [AMBER] Metal center created with MCPB.py collapses on MD start?
Gustavo Seabra via AMBER
(Tue Nov 08 2022 - 12:03:39 PST)
[AMBER] Problem with topology file generation
Tanmoy Paul via AMBER
(Fri Nov 04 2022 - 20:19:16 PDT)
Re: [AMBER] Problem with topology file generation
Gustavo Seabra via AMBER
(Sat Nov 05 2022 - 05:45:52 PDT)
[AMBER] Testing suite for openMP
James Kress via AMBER
(Sun Nov 13 2022 - 10:21:33 PST)
Re: [AMBER] Testing suite for openMP
David A Case via AMBER
(Tue Nov 15 2022 - 07:55:57 PST)
Re: [AMBER] Testing suite for openMP
James Kress via AMBER
(Tue Nov 15 2022 - 10:35:48 PST)
Re: [AMBER] Problem with topology file generation
Tanmoy Paul via AMBER
(Sat Nov 05 2022 - 17:26:47 PDT)
Re: [AMBER] Problem with topology file generation
Tanmoy Paul via AMBER
(Sun Nov 06 2022 - 02:43:48 PST)
Re: [AMBER] Problem with topology file generation
David A Case via AMBER
(Sun Nov 06 2022 - 14:00:46 PST)
Re: [AMBER] Problem with topology file generation
Tanmoy Paul via AMBER
(Sun Nov 06 2022 - 16:21:14 PST)
[AMBER] Installation problem on amber18 with parallel CPU in linux
Dulal Mondal via AMBER
(Sat Nov 05 2022 - 23:40:32 PDT)
Re: [AMBER] Installation problem on amber18 with parallel CPU in linux
David A Case via AMBER
(Sun Nov 06 2022 - 13:58:55 PST)
[AMBER] AMBER-TI running error
Hwang, Sunny via AMBER
(Mon Nov 07 2022 - 17:06:48 PST)
Re: [AMBER] {SPAM?} AMBER-TI running error
Matthew Guberman-Pfeffer via AMBER
(Mon Nov 07 2022 - 17:39:46 PST)
Re: [AMBER] AMBER-TI running error
Kevin Hauser via AMBER
(Mon Nov 07 2022 - 17:47:07 PST)
Re: [AMBER] AMBER-TI running error
David A Case via AMBER
(Mon Nov 07 2022 - 18:03:19 PST)
[AMBER] unbalanced usage of GPU cards in Replica Exchange MD
kurisaki2013--- via AMBER
(Mon Nov 07 2022 - 23:54:03 PST)
Re: [AMBER] Alchemical gti keyword questions
accuratefreeenergy--- via AMBER
(Tue Nov 08 2022 - 05:21:27 PST)
[AMBER] installation
Nitin Kulhar via AMBER
(Tue Nov 08 2022 - 05:34:54 PST)
Re: [AMBER] installation
David A Case via AMBER
(Wed Nov 09 2022 - 07:43:40 PST)
Re: [AMBER] installation
Nitin Kulhar via AMBER
(Thu Nov 10 2022 - 11:50:45 PST)
[AMBER] Reimaging issues
Damiano Spadoni via AMBER
(Tue Nov 08 2022 - 05:35:54 PST)
[AMBER] Reimaging issues
Damiano Spadoni via AMBER
(Mon Nov 28 2022 - 03:26:50 PST)
[AMBER] What is the "right" number of unit cells for simulating protein crystals?
Reim, Thorben via AMBER
(Tue Nov 08 2022 - 06:14:18 PST)
Re: [AMBER] What is the "right" number of unit cells for simulating protein crystals?
David A Case via AMBER
(Wed Nov 09 2022 - 07:50:09 PST)
[AMBER] Autoimage cannot find topology information
Hunter Wilson via AMBER
(Tue Nov 08 2022 - 10:39:10 PST)
Re: [AMBER] Autoimage cannot find topology information
Clorice Reinhardt via AMBER
(Tue Nov 08 2022 - 10:51:23 PST)
Re: [AMBER] Autoimage cannot find topology information
Daniel Roe via AMBER
(Tue Nov 08 2022 - 11:22:26 PST)
[AMBER] Query regarding AMBER tutorial
Munazzah Fatima Ansari via AMBER
(Wed Nov 09 2022 - 05:43:01 PST)
Re: [AMBER] Query regarding AMBER tutorial
Carlos Simmerling via AMBER
(Thu Nov 17 2022 - 08:45:17 PST)
[AMBER] Installation Problem
Matthew Guberman-Pfeffer via AMBER
(Wed Nov 09 2022 - 07:55:25 PST)
Re: [AMBER] Installation Problem
Scott Brozell via AMBER
(Wed Nov 09 2022 - 23:07:15 PST)
Re: [AMBER] Installation Problem
Matthew Guberman-Pfeffer via AMBER
(Thu Nov 10 2022 - 05:08:43 PST)
Re: [AMBER] Installation Problem
David A Case via AMBER
(Fri Nov 11 2022 - 08:13:03 PST)
Re: [AMBER] {SPAM?} Re: Installation Problem
Matthew Guberman-Pfeffer via AMBER
(Fri Nov 11 2022 - 08:15:19 PST)
Re: [AMBER] Installation Problem
David A Case via AMBER
(Thu Nov 10 2022 - 06:04:18 PST)
Re: [AMBER] Installation Problem
Matthew Guberman-Pfeffer via AMBER
(Thu Nov 10 2022 - 06:06:36 PST)
[AMBER] Changing CUDA toolkits - need recompile?
James Kress via AMBER
(Thu Nov 10 2022 - 11:14:56 PST)
Re: [AMBER] Changing CUDA toolkits - need recompile?
Scott Brozell via AMBER
(Thu Nov 10 2022 - 16:23:58 PST)
[AMBER] Fwd: Aluminum parameters, URGENT
Nour Alkhatib via AMBER
(Wed Nov 09 2022 - 09:06:51 PST)
Re: [AMBER] Fwd: Aluminum parameters, URGENT
David A Case via AMBER
(Thu Nov 10 2022 - 06:20:48 PST)
Re: [AMBER] Fwd: Aluminum parameters, URGENT
Nour Alkhatib via AMBER
(Thu Nov 10 2022 - 09:04:04 PST)
Re: [AMBER] Fwd: Aluminum parameters, URGENT
Dr. Anselm Horn via AMBER
(Thu Nov 10 2022 - 13:05:11 PST)
[AMBER] LJ parameters for AL3+
Nour Alkhatib via AMBER
(Wed Nov 09 2022 - 12:01:22 PST)
[AMBER] Trouble reproducing solvateOct output from Tutorial 1.4
Kerry Woolnough via AMBER
(Thu Nov 10 2022 - 08:28:00 PST)
[AMBER] Simulating a Protein - cyclic peptide complex - question
Suchetana Gupta via AMBER
(Thu Nov 10 2022 - 17:02:52 PST)
Re: [AMBER] Simulating a Protein - cyclic peptide complex - question
Carol Pacheco via AMBER
(Thu Nov 10 2022 - 17:36:40 PST)
Re: [AMBER] Simulating a Protein - cyclic peptide complex - question
Dr. Anselm Horn via AMBER
(Fri Nov 11 2022 - 01:47:18 PST)
Re: [AMBER] Simulating a Protein - cyclic peptide complex - question
David A Case via AMBER
(Fri Nov 11 2022 - 08:25:36 PST)
Re: [AMBER] Simulating a Protein - cyclic peptide complex - question
Suchetana Gupta via AMBER
(Fri Nov 11 2022 - 09:12:09 PST)
Re: [AMBER] Simulating a Protein - cyclic peptide complex - question
Suchetana Gupta via AMBER
(Mon Nov 28 2022 - 13:21:06 PST)
Re: [AMBER] Simulating a Protein - cyclic peptide complex - question
Dr. Anselm Horn via AMBER
(Tue Nov 29 2022 - 02:21:50 PST)
[AMBER] Generating parameters for unnatural amino acids
Suchetana Gupta via AMBER
(Thu Nov 10 2022 - 17:44:18 PST)
Re: [AMBER] Generating parameters for unnatural amino acids
Suchetana Gupta via AMBER
(Thu Nov 10 2022 - 18:03:58 PST)
Re: [AMBER] Generating parameters for unnatural amino acids
Dr. Anselm Horn via AMBER
(Fri Nov 11 2022 - 02:12:10 PST)
Re: [AMBER] Generating parameters for unnatural amino acids
Suchetana Gupta via AMBER
(Fri Nov 11 2022 - 09:15:14 PST)
[AMBER] Installation of amber18 on on parallel CPU
Dulal Mondal via AMBER
(Fri Nov 11 2022 - 10:49:21 PST)
[AMBER] Installation of amber18 (MPI version) with CPU and intel mpi
Dulal Mondal via AMBER
(Fri Nov 11 2022 - 23:59:33 PST)
Re: [AMBER] Installation of amber18 (MPI version) with CPU and intel mpi
David A Case via AMBER
(Sat Nov 12 2022 - 07:13:30 PST)
Re: [AMBER] Installation of amber18 (MPI version) with CPU and intel mpi
Dulal Mondal via AMBER
(Mon Nov 14 2022 - 23:47:34 PST)
Re: [AMBER] Installation of amber18 (MPI version) with CPU and intel mpi
Dulal Mondal via AMBER
(Wed Nov 16 2022 - 06:46:57 PST)
Re: [AMBER] Installation of amber18 (MPI version) with CPU and intel mpi
David A Case via AMBER
(Thu Nov 17 2022 - 05:38:16 PST)
Re: [AMBER] {SPAM?} Re: Alchemical gti keyword questions
accuratefreeenergy--- via AMBER
(Sat Nov 12 2022 - 05:06:23 PST)
Re: [AMBER] Simulation of ssDNA folding
Jiaan Zhu via AMBER
(Sat Nov 12 2022 - 14:19:33 PST)
[AMBER] Postdoc and PhD position at IPB Halle (Germany)
Mehdi D. Davari via AMBER
(Mon Nov 14 2022 - 01:43:38 PST)
[AMBER] Only three atoms in water molecules instead of four
Dmitry Suplatov via AMBER
(Tue Nov 29 2022 - 06:25:09 PST)
Re: [AMBER] Only three atoms in water molecules instead of four
Dmitry Suplatov via AMBER
(Tue Nov 29 2022 - 08:43:26 PST)
[AMBER] Query regarding RMS in minimization of explicit solvent
Nitin Kulhar via AMBER
(Tue Nov 15 2022 - 00:00:08 PST)
Re: [AMBER] Query regarding RMS in minimization of explicit solvent
David A Case via AMBER
(Tue Nov 15 2022 - 07:47:50 PST)
[AMBER] Installation of Amber19
SATYAJIT KHATUA via AMBER
(Tue Nov 15 2022 - 02:23:36 PST)
Re: [AMBER] Installation of Amber19
David A Case via AMBER
(Tue Nov 15 2022 - 07:51:26 PST)
[AMBER] Unable to access xleap software!
Swapnil Singh via AMBER
(Tue Nov 15 2022 - 09:09:18 PST)
Re: [AMBER] Unable to access xleap software!
David A Case via AMBER
(Tue Nov 15 2022 - 10:30:13 PST)
Re: [AMBER] Unable to access xleap software!
Swapnil Singh via AMBER
(Tue Nov 15 2022 - 13:06:23 PST)
Re: [AMBER] Unable to access xleap software!
Suchetana Gupta via AMBER
(Tue Nov 15 2022 - 14:18:04 PST)
[AMBER] Force filed for non-specific residue CAS
Jelena Tosovic via AMBER
(Tue Nov 15 2022 - 16:07:15 PST)
Re: [AMBER] {SPAM?} Force filed for non-specific residue CAS
Matthew Guberman-Pfeffer via AMBER
(Tue Nov 15 2022 - 18:53:03 PST)
Re: [AMBER] {SPAM?} Force filed for non-specific residue CAS
Carlos Simmerling via AMBER
(Wed Nov 16 2022 - 07:24:49 PST)
[AMBER] 你好amber@ambermd.org
3163490855--- via AMBER
(Tue Nov 15 2022 - 18:46:52 PST)
[AMBER] How to use MCPB.py to deal with the oxygen atom Fe=O of CpdⅠ
张恒炜 via AMBER
(Wed Nov 16 2022 - 00:02:49 PST)
[AMBER] Position restraints in NPT
Miroslav Suruzhon via AMBER
(Wed Nov 16 2022 - 04:43:10 PST)
Re: [AMBER] Position restraints in NPT
Franz Waibl via AMBER
(Thu Nov 17 2022 - 05:10:49 PST)
Re: [AMBER] Position restraints in NPT
Miroslav Suruzhon via AMBER
(Tue Nov 22 2022 - 06:09:15 PST)
Re: [AMBER] Position restraints in NPT
Franz Waibl via AMBER
(Wed Nov 23 2022 - 03:05:24 PST)
Re: [AMBER] Position restraints in NPT
Miroslav Suruzhon via AMBER
(Thu Nov 24 2022 - 02:15:17 PST)
[AMBER] Gradual heating: Linear response pressure?
Hocine EL KHAOUDI ENYOURY via AMBER
(Thu Nov 17 2022 - 01:49:12 PST)
Re: [AMBER] Gradual heating: Linear response pressure?
David A Case via AMBER
(Fri Nov 18 2022 - 08:12:13 PST)
Re: [AMBER] Gradual heating: Linear response pressure?
Hocine EL KHAOUDI ENYOURY via AMBER
(Mon Nov 21 2022 - 02:16:50 PST)
Re: [AMBER] Gradual heating: Linear response pressure?
Carlos Simmerling via AMBER
(Mon Nov 21 2022 - 08:14:16 PST)
Re: [AMBER] Gradual heating: Linear response pressure?
Carlos Simmerling via AMBER
(Wed Nov 23 2022 - 06:55:20 PST)
Re: [AMBER] Gradual heating: Linear response pressure?
David A Case via AMBER
(Wed Nov 23 2022 - 09:06:35 PST)
[AMBER] Temperature drop while switching from NVT to NPT during equilibration
Reim, Thorben via AMBER
(Thu Nov 17 2022 - 03:46:21 PST)
Re: [AMBER] Temperature drop while switching from NVT to NPT during equilibration
Carlos Simmerling via AMBER
(Thu Nov 17 2022 - 07:19:00 PST)
Re: [AMBER] Temperature drop while switching from NVT to NPT during equilibration
David A Case via AMBER
(Thu Nov 17 2022 - 12:38:18 PST)
[AMBER] amber tools2016
sxl18235290334--- via AMBER
(Thu Nov 17 2022 - 05:50:31 PST)
Re: [AMBER] amber tools2016
Dr. Anselm Horn via AMBER
(Thu Nov 17 2022 - 06:22:03 PST)
[AMBER] Restart and Topology Files Contain Different Numbers of Atoms
Kerry Woolnough via AMBER
(Thu Nov 17 2022 - 09:29:31 PST)
Re: [AMBER] Restart and Topology Files Contain Different Numbers of Atoms
Carlos Simmerling via AMBER
(Thu Nov 17 2022 - 09:32:08 PST)
Re: [AMBER] Restart and Topology Files Contain Different Numbers of Atoms
Kerry Woolnough via AMBER
(Thu Nov 17 2022 - 12:16:21 PST)
Re: [AMBER] Restart and Topology Files Contain Different Numbers of Atoms
David A Case via AMBER
(Thu Nov 17 2022 - 12:47:03 PST)
Re: [AMBER] Restart and Topology Files Contain Different Numbers of Atoms
Kerry Woolnough via AMBER
(Fri Nov 18 2022 - 10:21:57 PST)
Re: [AMBER] Restart and Topology Files Contain Different Numbers of Atoms
Carlos Simmerling via AMBER
(Fri Nov 18 2022 - 10:23:13 PST)
[AMBER] Extract all frame from a nc file using cpptraj
Dulal Mondal via AMBER
(Fri Nov 18 2022 - 11:04:14 PST)
Re: [AMBER] Extract all frame from a nc file using cpptraj
Carlos Simmerling via AMBER
(Fri Nov 18 2022 - 11:14:10 PST)
[AMBER] gmx_MMPBSA installation error please help
İmren Bayıl via AMBER
(Fri Nov 18 2022 - 15:42:52 PST)
Re: [AMBER] gmx_MMPBSA installation error please help
David A Case via AMBER
(Sat Nov 19 2022 - 06:16:34 PST)
Re: [AMBER] gmx_MMPBSA installation error please help
İmren Bayıl via AMBER
(Sat Nov 19 2022 - 08:09:45 PST)
[AMBER] gmx_MMPBSA installation error
İmren Bayıl via AMBER
(Sat Nov 19 2022 - 02:26:33 PST)
[AMBER] Missing GaMD restart file
Matthew Guberman-Pfeffer via AMBER
(Sat Nov 19 2022 - 21:50:21 PST)
[AMBER] Vacuum simulation problem
Matthew Guberman-Pfeffer via AMBER
(Sun Nov 20 2022 - 11:37:34 PST)
Re: [AMBER] Vacuum simulation problem
James Kress via AMBER
(Sun Nov 20 2022 - 13:29:27 PST)
Re: [AMBER] {SPAM?} Re: Vacuum simulation problem
Matthew Guberman-Pfeffer via AMBER
(Sun Nov 20 2022 - 14:15:09 PST)
Re: [AMBER] Vacuum simulation problem
David A Case via AMBER
(Mon Nov 21 2022 - 06:33:11 PST)
Re: [AMBER] {SPAM?} Re: Vacuum simulation problem
Matthew Guberman-Pfeffer via AMBER
(Mon Nov 21 2022 - 06:44:54 PST)
[AMBER] MM/PBSA & MM/GBSA and three trajectories
Ibrahim Said via AMBER
(Sun Nov 20 2022 - 12:13:11 PST)
[AMBER] OPC3-pol
Piia Bartos via AMBER
(Mon Nov 21 2022 - 03:20:53 PST)
Re: [AMBER] OPC3-pol
Carlos Simmerling via AMBER
(Mon Nov 21 2022 - 08:12:47 PST)
Re: [AMBER] OPC3-pol
Piia Bartos via AMBER
(Sat Nov 26 2022 - 00:06:19 PST)
Re: [AMBER] OPC3-pol
Piia Bartos via AMBER
(Tue Nov 29 2022 - 00:42:34 PST)
[AMBER] Generation of CPIN in CpHMD simulations
Divya Rai via AMBER
(Mon Nov 21 2022 - 06:44:53 PST)
Re: [AMBER] Generation of CPIN in CpHMD simulations
Vinicius Wilian Cruzeiro via AMBER
(Mon Nov 21 2022 - 07:55:44 PST)
Re: [AMBER] Generation of CPIN in CpHMD simulations
Divya Rai via AMBER
(Tue Nov 22 2022 - 03:24:33 PST)
[AMBER] Questions about refinement of dihedral parameters by QM calculations
He, Amy via AMBER
(Mon Nov 21 2022 - 09:52:51 PST)
Re: [AMBER] Questions about refinement of dihedral parameters by QM calculations
Carlos Simmerling via AMBER
(Mon Nov 21 2022 - 09:55:35 PST)
Re: [AMBER] Lambda-Scheduling, what is TypeGen?
accuratefreeenergy--- via AMBER
(Mon Nov 21 2022 - 20:06:37 PST)
[AMBER] the mmgbsa output
laura zhang via AMBER
(Tue Nov 22 2022 - 06:52:10 PST)
Re: [AMBER] the mmgbsa output
Bill Miller III via AMBER
(Tue Nov 22 2022 - 09:59:27 PST)
Re: [AMBER] MCPB.py (Error: the charges and atom numbers are mismatch)
Saranya vasudevan via AMBER
(Tue Nov 22 2022 - 07:27:45 PST)
[AMBER] Messages not getting through to the Amber Mailing List?
Gert Kruger via AMBER
(Tue Nov 22 2022 - 08:25:48 PST)
Re: [AMBER] Messages not getting through to the Amber Mailing List?
Suchetana Gupta via AMBER
(Tue Nov 22 2022 - 08:28:13 PST)
Re: [AMBER] Messages not getting through to the Amber Mailing List?
Dr. Anselm Horn via AMBER
(Wed Nov 23 2022 - 02:58:03 PST)
Re: [AMBER] Messages not getting through to the Amber Mailing List?
David A Case via AMBER
(Tue Nov 22 2022 - 10:28:02 PST)
[AMBER] TIP4P/Ice (2005) water model in AMBER?
Surajit Kalita via AMBER
(Thu Nov 24 2022 - 00:40:58 PST)
[AMBER] Error - Amber 22 Installation with Cuda
Gert Kruger via AMBER
(Thu Nov 24 2022 - 03:20:25 PST)
Re: [AMBER] Error - Amber 22 Installation with Cuda
David A Case via AMBER
(Mon Nov 28 2022 - 06:15:08 PST)
[AMBER] Applying position restraint on ligand
Enrico Martinez via AMBER
(Thu Nov 24 2022 - 07:51:11 PST)
Re: [AMBER] Applying position restraint on ligand
Gustavo Seabra via AMBER
(Thu Nov 24 2022 - 08:04:27 PST)
Re: [AMBER] Applying position restraint on ligand
Enrico Martinez via AMBER
(Fri Nov 25 2022 - 00:52:35 PST)
Re: [AMBER] Applying position restraint on ligand
Enrico Martinez via AMBER
(Fri Nov 25 2022 - 01:55:22 PST)
[AMBER] Antechamber and py_resp qout format
Евгений Кадцын via AMBER
(Thu Nov 24 2022 - 10:05:17 PST)
Re: [AMBER] Antechamber and py_resp qout format
Shiji Zhao via AMBER
(Mon Nov 28 2022 - 20:40:21 PST)
[AMBER] Cpptraj for loops and dataset operations
Pietro ARONICA via AMBER
(Thu Nov 24 2022 - 22:13:00 PST)
Re: [AMBER] Cpptraj for loops and dataset operations
Daniel Roe via AMBER
(Wed Nov 30 2022 - 05:07:59 PST)
Re: [AMBER] Cpptraj for loops and dataset operations
Daniel Roe via AMBER
(Wed Nov 30 2022 - 09:30:54 PST)
Re: [AMBER] Cpptraj for loops and dataset operations
James Kress via AMBER
(Wed Nov 30 2022 - 14:25:04 PST)
Re: [AMBER] Cpptraj for loops and dataset operations
Carlos Simmerling via AMBER
(Wed Nov 30 2022 - 14:26:24 PST)
[AMBER] Questions about reading the right LJ_Acoef values in *.prmtop file
ChenXin via AMBER
(Fri Nov 25 2022 - 23:04:15 PST)
Re: [AMBER] Questions about reading the right LJ_Acoef values in *.prmtop file
Carlos Simmerling via AMBER
(Sat Nov 26 2022 - 02:50:08 PST)
[AMBER] Inconsistent GPU Results
Matthew Guberman-Pfeffer via AMBER
(Sun Nov 27 2022 - 06:44:50 PST)
Re: [AMBER] Inconsistent GPU Results
David A Case via AMBER
(Mon Nov 28 2022 - 06:22:28 PST)
Re: [AMBER] {SPAM?} Re: Inconsistent GPU Results
Matthew Guberman-Pfeffer via AMBER
(Mon Nov 28 2022 - 07:57:58 PST)
Re: [AMBER] {SPAM?} Inconsistent GPU Results
Matthew Guberman-Pfeffer via AMBER
(Sun Nov 27 2022 - 07:58:35 PST)
Re: [AMBER] gti_cut vs. gti_cut_sc
accuratefreeenergy--- via AMBER
(Mon Nov 28 2022 - 06:53:31 PST)
Re: [AMBER] {SPAM?} scbeta, wrong default?
accuratefreeenergy--- via AMBER
(Mon Nov 28 2022 - 06:54:12 PST)
Re: [AMBER] {SPAM?} scbeta, wrong default?
accuratefreeenergy--- via AMBER
(Tue Nov 29 2022 - 05:34:55 PST)
[AMBER] Missing parameters while Simulating a Zn containing protein in Amber
Suchetana Gupta via AMBER
(Mon Nov 28 2022 - 10:14:58 PST)
[AMBER] Detect vacuum bubbles
Hocine EL KHAOUDI ENYOURY via AMBER
(Tue Nov 29 2022 - 05:12:35 PST)
Re: [AMBER] Detect vacuum bubbles
Carlos Simmerling via AMBER
(Tue Nov 29 2022 - 05:53:00 PST)
[AMBER] test FAILURE in ired.vec.diff
Martin Juhás via AMBER
(Tue Nov 29 2022 - 08:05:49 PST)
Re: [AMBER] test FAILURE in ired.vec.diff
Daniel Roe via AMBER
(Tue Nov 29 2022 - 09:08:45 PST)
[AMBER] monovalent ions in methanol
Antonija Tomić via AMBER
(Wed Nov 30 2022 - 04:39:55 PST)
[AMBER] Updates to mdinfo with amber 22
Greenberg, Jerry via AMBER
(Wed Nov 30 2022 - 13:46:26 PST)
Last message date
:
Wed Nov 30 2022 - 15:00:02 PST
Archived on
: Wed Dec 25 2024 - 05:56:13 PST
203 messages
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