did you load coordinates after the prmtop? you can load individual restart
files, or a trajectory. there are many formats, and depending on your file
extension you probably need to tell VMD which format it is.
look at your VMD console screen - it will tell you if there was an error
loading the coordinate file.
the Amber-VMD tutorials might help
https://ambermd.org/tutorials/VMD.php
On Mon, Aug 29, 2022 at 12:08 PM Sneha Kandapal via AMBER <amber.ambermd.org>
wrote:
> Hello Everyone,
>
> I am trying to simulate drug-DNA molecule. I was successful in simulating
> the complex by following the tutorials. However, when I am trying to load
> the files into VMD, it shows zero frame. I would appreciate if you could
> please help me finding the error.
>
> [cid:19d5622f-9dd1-4167-9a32-11f8ff84918f]
>
> Thank you,
> Sneha
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Received on Mon Aug 29 2022 - 09:30:10 PDT
