Dear Yoichi,
on the Amber website, the tab "Force Fields" contains an overview of the
available parameters; following the link "Force fields for ions"
provides you with an overview of the available parameters/force fields,
a link to the manual is also included:
http://ambermd.org/AmberModels_ions.php
The free AmberTools comprise all computational tools and parameter files
to setup MD simulations with AMBER and run them via sander, so they are
sufficient. For larger/longer production runs, however, the optimized
pmemd program is available and highly recommended.
Hope that helps (although my answer was more related to AMBER than to
Chimera),
Anselm
Bioinformatik | NHR.FAU
Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)
Germany
Am 29.08.2022 um 09:24 schrieb 幅田揚一 via AMBER:
> Dear all involved in the Chimera project,
>
> I am a new user and beginner of Chimera and MD simulations. In our
> research group, I want to do MD simulations of complexes with Ag+ ions.
> By downloading Amber Tools, will we be able to use Amber's force field that
> allows us to use Ag+?
> I would appreciate it if you could let me know.
>
> Sincerely yours,
> Yoichi Habata
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Received on Mon Aug 29 2022 - 01:30:04 PDT
