Hi everyone,
I want to check a water bridge formed between protein and ligand in my system such as protein-water-ligand. I tried this command ==> hbond All out All.hbvtime.dat solventdonor :WAT solventacceptor :WAT.O* avgout All.UU.avg.dat solvout All.UV.avg.dat bridgeout All.bridge.avg.dat but I am not clear about out file All.bridge.avg.dat file, how it formed bridge between them exactly. The All.bridge.avg.dat file was generated by such data such as below
Bridge Res 33:GLU 34:LEU , 789 frames.
Bridge Res 15:ARG 57:GLU , 742 frames.
Bridge Res 48:ILE 60:LEU , 705 frames.
which I am not looking for, Is there any other way of analyzing protein-water-ligand bridges? and also what does it mean which was generated in out file All.bridge.avg.dat. Please help me to understand.
Any help will be highly appreciated. Thank you in advance.
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Received on Mon Apr 04 2022 - 07:00:02 PDT
