-- **************************************************************************
-- Starting configuration of Amber version 20.0.0...
-- CMake Version: 3.20.1
-- For how to use this build system, please read this wiki:
--     http://ambermd.org/pmwiki/pmwiki.php/Main/CMake
-- For a list of important CMake variables, check here:
--     http://ambermd.org/pmwiki/pmwiki.php/Main/CMake-Common-Options
-- **************************************************************************
-- Amber source found, building AmberTools and Amber
CUDA_TOOLKIT_ROOT_DIR not found or specified
-- Could NOT find CUDA (missing: CUDA_TOOLKIT_ROOT_DIR CUDA_NVCC_EXECUTABLE CUDA_INCLUDE_DIRS CUDA_CUDART_LIBRARY) 
-- Downloading Python 3 Miniconda
-- Detected Linux OS. Downloading the Linux installer
-- Using 64 bit miniconda
Downloading http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -> /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/download/Miniconda3-latest-Linux-x86_64.sh
##O=#    #                                                                                                                                                  

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#####################################################################                                                                                   46.4%
##########################################################################################                                                              60.2%
#############################################################################################################                                           73.2%
##################################################################################################################################                      86.9%
###################################################################################################################################################### 100.0%
Installing Miniconda Python.
PREFIX=/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install
Unpacking payload ...

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Extracting : openssl-1.1.1k-h27cfd23_0.conda:   0%|          | 0/38 [00:07<?, ?it/s]
Extracting : openssl-1.1.1k-h27cfd23_0.conda:   3%|▎         | 1/38 [00:07<04:24,  7.16s/it]
Extracting : ncurses-6.2-he6710b0_1.conda:   3%|▎         | 1/38 [00:36<04:24,  7.16s/it]   
Extracting : ncurses-6.2-he6710b0_1.conda:   5%|▌         | 2/38 [00:36<08:15, 13.76s/it]
Extracting : urllib3-1.26.6-pyhd3eb1b0_1.conda:   5%|▌         | 2/38 [00:36<08:15, 13.76s/it]
Extracting : ca-certificates-2021.7.5-h06a4308_1.conda:   8%|▊         | 3/38 [00:36<08:01, 13.76s/it]
Extracting : tqdm-4.61.2-pyhd3eb1b0_1.conda:  11%|█         | 4/38 [00:36<07:47, 13.76s/it]           
Extracting : yaml-0.2.5-h7b6447c_0.conda:  13%|█▎        | 5/38 [00:36<07:34, 13.76s/it]   
Extracting : certifi-2021.5.30-py39h06a4308_0.conda:  16%|█▌        | 6/38 [00:36<07:20, 13.76s/it]
Extracting : readline-8.1-h27cfd23_0.conda:  18%|█▊        | 7/38 [00:36<07:06, 13.76s/it]         
Extracting : conda-package-handling-1.7.3-py39h27cfd23_1.conda:  21%|██        | 8/38 [00:36<06:52, 13.76s/it]
Extracting : pip-21.1.3-py39h06a4308_0.conda:  24%|██▎       | 9/38 [00:36<06:39, 13.76s/it]                  
Extracting : tzdata-2021a-h52ac0ba_0.conda:  26%|██▋       | 10/38 [00:36<06:25, 13.76s/it] 
Extracting : ld_impl_linux-64-2.35.1-h7274673_9.conda:  29%|██▉       | 11/38 [00:36<06:11, 13.76s/it]
Extracting : libgcc-ng-9.3.0-h5101ec6_17.conda:  32%|███▏      | 12/38 [00:36<05:57, 13.76s/it]       
Extracting : libgomp-9.3.0-h5101ec6_17.conda:  34%|███▍      | 13/38 [00:36<05:44, 13.76s/it]  
Extracting : requests-2.25.1-pyhd3eb1b0_0.conda:  37%|███▋      | 14/38 [00:36<05:30, 13.76s/it]
Extracting : _libgcc_mutex-0.1-main.conda:  39%|███▉      | 15/38 [00:36<05:16, 13.76s/it]      
Extracting : sqlite-3.36.0-hc218d9a_0.conda:  42%|████▏     | 16/38 [00:36<05:02, 13.76s/it]
Extracting : chardet-4.0.0-py39h06a4308_1003.conda:  45%|████▍     | 17/38 [00:36<04:48, 13.76s/it]
Extracting : brotlipy-0.7.0-py39h27cfd23_1003.conda:  47%|████▋     | 18/38 [00:36<04:35, 13.76s/it]
Extracting : tk-8.6.10-hbc83047_0.conda:  50%|█████     | 19/38 [00:36<04:21, 13.76s/it]            
Extracting : wheel-0.36.2-pyhd3eb1b0_0.conda:  53%|█████▎    | 20/38 [00:36<04:07, 13.76s/it]
Extracting : xz-5.2.5-h7b6447c_0.conda:  55%|█████▌    | 21/38 [00:36<03:53, 13.76s/it]      
Extracting : setuptools-52.0.0-py39h06a4308_0.conda:  58%|█████▊    | 22/38 [00:36<03:40, 13.76s/it]
Extracting : six-1.16.0-pyhd3eb1b0_0.conda:  61%|██████    | 23/38 [00:36<03:26, 13.76s/it]         
Extracting : cryptography-3.4.7-py39hd23ed53_0.conda:  63%|██████▎   | 24/38 [00:36<03:12, 13.76s/it]
Extracting : libffi-3.3-he6710b0_2.conda:  66%|██████▌   | 25/38 [00:36<02:58, 13.76s/it]            
Extracting : zlib-1.2.11-h7b6447c_3.conda:  68%|██████▊   | 26/38 [00:36<02:45, 13.76s/it]
Extracting : ruamel_yaml-0.15.100-py39h27cfd23_0.conda:  71%|███████   | 27/38 [00:36<02:31, 13.76s/it]
Extracting : pycosat-0.6.3-py39h27cfd23_0.conda:  74%|███████▎  | 28/38 [00:36<02:17, 13.76s/it]       
Extracting : pycparser-2.20-py_2.conda:  76%|███████▋  | 29/38 [00:36<02:03, 13.76s/it]         
Extracting : pysocks-1.7.1-py39h06a4308_0.conda:  79%|███████▉  | 30/38 [00:36<01:50, 13.76s/it]
Extracting : pyopenssl-20.0.1-pyhd3eb1b0_1.conda:  82%|████████▏ | 31/38 [00:36<01:36, 13.76s/it]
Extracting : cffi-1.14.6-py39h400218f_0.conda:  84%|████████▍ | 32/38 [00:36<01:22, 13.76s/it]   
Extracting : libstdcxx-ng-9.3.0-hd4cf53a_17.conda:  87%|████████▋ | 33/38 [00:36<01:08, 13.76s/it]
Extracting : python-3.9.5-h12debd9_4.tar.bz2:  89%|████████▉ | 34/38 [00:43<00:55, 13.76s/it]     
Extracting : python-3.9.5-h12debd9_4.tar.bz2:  92%|█████████▏| 35/38 [00:43<00:29,  9.69s/it]
Extracting : conda-4.10.3-py39h06a4308_0.tar.bz2:  92%|█████████▏| 35/38 [00:43<00:29,  9.69s/it]
Extracting : _openmp_mutex-4.5-1_gnu.tar.bz2:  95%|█████████▍| 36/38 [00:43<00:19,  9.69s/it]    
Extracting : idna-2.10-pyhd3eb1b0_0.tar.bz2:  97%|█████████▋| 37/38 [00:43<00:09,  9.69s/it] 
                                                                                            
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install

  added / updated specs:
    - _libgcc_mutex==0.1=main
    - _openmp_mutex==4.5=1_gnu
    - brotlipy==0.7.0=py39h27cfd23_1003
    - ca-certificates==2021.7.5=h06a4308_1
    - certifi==2021.5.30=py39h06a4308_0
    - cffi==1.14.6=py39h400218f_0
    - chardet==4.0.0=py39h06a4308_1003
    - conda-package-handling==1.7.3=py39h27cfd23_1
    - conda==4.10.3=py39h06a4308_0
    - cryptography==3.4.7=py39hd23ed53_0
    - idna==2.10=pyhd3eb1b0_0
    - ld_impl_linux-64==2.35.1=h7274673_9
    - libffi==3.3=he6710b0_2
    - libgcc-ng==9.3.0=h5101ec6_17
    - libgomp==9.3.0=h5101ec6_17
    - libstdcxx-ng==9.3.0=hd4cf53a_17
    - ncurses==6.2=he6710b0_1
    - openssl==1.1.1k=h27cfd23_0
    - pip==21.1.3=py39h06a4308_0
    - pycosat==0.6.3=py39h27cfd23_0
    - pycparser==2.20=py_2
    - pyopenssl==20.0.1=pyhd3eb1b0_1
    - pysocks==1.7.1=py39h06a4308_0
    - python==3.9.5=h12debd9_4
    - readline==8.1=h27cfd23_0
    - requests==2.25.1=pyhd3eb1b0_0
    - ruamel_yaml==0.15.100=py39h27cfd23_0
    - setuptools==52.0.0=py39h06a4308_0
    - six==1.16.0=pyhd3eb1b0_0
    - sqlite==3.36.0=hc218d9a_0
    - tk==8.6.10=hbc83047_0
    - tqdm==4.61.2=pyhd3eb1b0_1
    - tzdata==2021a=h52ac0ba_0
    - urllib3==1.26.6=pyhd3eb1b0_1
    - wheel==0.36.2=pyhd3eb1b0_0
    - xz==5.2.5=h7b6447c_0
    - yaml==0.2.5=h7b6447c_0
    - zlib==1.2.11=h7b6447c_3


The following NEW packages will be INSTALLED:

  _libgcc_mutex      pkgs/main/linux-64::_libgcc_mutex-0.1-main
  _openmp_mutex      pkgs/main/linux-64::_openmp_mutex-4.5-1_gnu
  brotlipy           pkgs/main/linux-64::brotlipy-0.7.0-py39h27cfd23_1003
  ca-certificates    pkgs/main/linux-64::ca-certificates-2021.7.5-h06a4308_1
  certifi            pkgs/main/linux-64::certifi-2021.5.30-py39h06a4308_0
  cffi               pkgs/main/linux-64::cffi-1.14.6-py39h400218f_0
  chardet            pkgs/main/linux-64::chardet-4.0.0-py39h06a4308_1003
  conda              pkgs/main/linux-64::conda-4.10.3-py39h06a4308_0
  conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.7.3-py39h27cfd23_1
  cryptography       pkgs/main/linux-64::cryptography-3.4.7-py39hd23ed53_0
  idna               pkgs/main/noarch::idna-2.10-pyhd3eb1b0_0
  ld_impl_linux-64   pkgs/main/linux-64::ld_impl_linux-64-2.35.1-h7274673_9
  libffi             pkgs/main/linux-64::libffi-3.3-he6710b0_2
  libgcc-ng          pkgs/main/linux-64::libgcc-ng-9.3.0-h5101ec6_17
  libgomp            pkgs/main/linux-64::libgomp-9.3.0-h5101ec6_17
  libstdcxx-ng       pkgs/main/linux-64::libstdcxx-ng-9.3.0-hd4cf53a_17
  ncurses            pkgs/main/linux-64::ncurses-6.2-he6710b0_1
  openssl            pkgs/main/linux-64::openssl-1.1.1k-h27cfd23_0
  pip                pkgs/main/linux-64::pip-21.1.3-py39h06a4308_0
  pycosat            pkgs/main/linux-64::pycosat-0.6.3-py39h27cfd23_0
  pycparser          pkgs/main/noarch::pycparser-2.20-py_2
  pyopenssl          pkgs/main/noarch::pyopenssl-20.0.1-pyhd3eb1b0_1
  pysocks            pkgs/main/linux-64::pysocks-1.7.1-py39h06a4308_0
  python             pkgs/main/linux-64::python-3.9.5-h12debd9_4
  readline           pkgs/main/linux-64::readline-8.1-h27cfd23_0
  requests           pkgs/main/noarch::requests-2.25.1-pyhd3eb1b0_0
  ruamel_yaml        pkgs/main/linux-64::ruamel_yaml-0.15.100-py39h27cfd23_0
  setuptools         pkgs/main/linux-64::setuptools-52.0.0-py39h06a4308_0
  six                pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_0
  sqlite             pkgs/main/linux-64::sqlite-3.36.0-hc218d9a_0
  tk                 pkgs/main/linux-64::tk-8.6.10-hbc83047_0
  tqdm               pkgs/main/noarch::tqdm-4.61.2-pyhd3eb1b0_1
  tzdata             pkgs/main/noarch::tzdata-2021a-h52ac0ba_0
  urllib3            pkgs/main/noarch::urllib3-1.26.6-pyhd3eb1b0_1
  wheel              pkgs/main/noarch::wheel-0.36.2-pyhd3eb1b0_0
  xz                 pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
  yaml               pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
  zlib               pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3


Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
-- Updating and installing required and optional packages...
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.10.3
  latest version: 4.11.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install

  added / updated specs:
    - conda


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    _openmp_mutex-4.5          |            1_gnu          22 KB  conda-forge
    brotlipy-0.7.0             |py39h3811e60_1003         342 KB  conda-forge
    certifi-2021.10.8          |   py39hf3d152e_1         145 KB  conda-forge
    cffi-1.15.0                |   py39h4bc2ebd_0         227 KB  conda-forge
    charset-normalizer-2.0.11  |     pyhd8ed1ab_0          35 KB  conda-forge
    colorama-0.4.4             |     pyh9f0ad1d_0          18 KB  conda-forge
    conda-4.11.0               |   py39hf3d152e_0        16.8 MB  conda-forge
    conda-package-handling-1.7.3|   py39h3811e60_1        1005 KB  conda-forge
    cryptography-36.0.0        |   py39h9ce1e76_0         1.3 MB
    idna-3.3                   |     pyhd8ed1ab_0          55 KB  conda-forge
    libgcc-ng-11.2.0           |      h1d223b6_12         904 KB  conda-forge
    libgomp-11.2.0             |      h1d223b6_12         426 KB  conda-forge
    ncurses-6.3                |       h9c3ff4c_0        1012 KB  conda-forge
    openssl-3.0.0              |       h7f98852_2         2.9 MB  conda-forge
    pip-22.0.2                 |     pyhd8ed1ab_0         1.5 MB  conda-forge
    pycosat-0.6.3              |py39h3811e60_1009         107 KB  conda-forge
    pycparser-2.21             |     pyhd8ed1ab_0         100 KB  conda-forge
    pyopenssl-22.0.0           |     pyhd8ed1ab_0          49 KB  conda-forge
    pysocks-1.7.1              |   py39hf3d152e_4          28 KB  conda-forge
    python-3.9.10              |hc74c709_2_cpython        27.6 MB  conda-forge
    python_abi-3.9             |           2_cp39           4 KB  conda-forge
    requests-2.27.1            |     pyhd8ed1ab_0          53 KB  conda-forge
    ruamel_yaml-0.15.80        |py39h3811e60_1006         268 KB  conda-forge
    setuptools-60.6.0          |   py39hf3d152e_0         1.0 MB  conda-forge
    tqdm-4.62.3                |     pyhd8ed1ab_0          80 KB  conda-forge
    tzdata-2021e               |       he74cb21_0         121 KB  conda-forge
    urllib3-1.26.8             |     pyhd8ed1ab_1         100 KB  conda-forge
    yaml-0.2.5                 |       h7f98852_2          87 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        56.2 MB

The following NEW packages will be INSTALLED:

  bzip2              conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
  charset-normalizer conda-forge/noarch::charset-normalizer-2.0.11-pyhd8ed1ab_0
  colorama           conda-forge/noarch::colorama-0.4.4-pyh9f0ad1d_0
  libnsl             conda-forge/linux-64::libnsl-2.0.0-h7f98852_0
  libuuid            conda-forge/linux-64::libuuid-2.32.1-h7f98852_1000
  libzlib            conda-forge/linux-64::libzlib-1.2.11-h36c2ea0_1013
  python_abi         conda-forge/linux-64::python_abi-3.9-2_cp39

The following packages will be REMOVED:

  chardet-4.0.0-py39h06a4308_1003
  libstdcxx-ng-9.3.0-hd4cf53a_17

The following packages will be UPDATED:

  ca-certificates    pkgs/main::ca-certificates-2021.7.5-h~ --> conda-forge::ca-certificates-2021.10.8-ha878542_0
  certifi            pkgs/main::certifi-2021.5.30-py39h06a~ --> conda-forge::certifi-2021.10.8-py39hf3d152e_1
  cffi                pkgs/main::cffi-1.14.6-py39h400218f_0 --> conda-forge::cffi-1.15.0-py39h4bc2ebd_0
  conda              pkgs/main::conda-4.10.3-py39h06a4308_0 --> conda-forge::conda-4.11.0-py39hf3d152e_0
  cryptography                         3.4.7-py39hd23ed53_0 --> 36.0.0-py39h9ce1e76_0
  idna                    pkgs/main::idna-2.10-pyhd3eb1b0_0 --> conda-forge::idna-3.3-pyhd8ed1ab_0
  ld_impl_linux-64   pkgs/main::ld_impl_linux-64-2.35.1-h7~ --> conda-forge::ld_impl_linux-64-2.36.1-hea4e1c9_2
  libffi                   pkgs/main::libffi-3.3-he6710b0_2 --> conda-forge::libffi-3.4.2-h7f98852_5
  libgcc-ng          pkgs/main::libgcc-ng-9.3.0-h5101ec6_17 --> conda-forge::libgcc-ng-11.2.0-h1d223b6_12
  libgomp              pkgs/main::libgomp-9.3.0-h5101ec6_17 --> conda-forge::libgomp-11.2.0-h1d223b6_12
  ncurses                 pkgs/main::ncurses-6.2-he6710b0_1 --> conda-forge::ncurses-6.3-h9c3ff4c_0
  openssl              pkgs/main::openssl-1.1.1k-h27cfd23_0 --> conda-forge::openssl-3.0.0-h7f98852_2
  pip                pkgs/main/linux-64::pip-21.1.3-py39h0~ --> conda-forge/noarch::pip-22.0.2-pyhd8ed1ab_0
  pycosat            pkgs/main::pycosat-0.6.3-py39h27cfd23~ --> conda-forge::pycosat-0.6.3-py39h3811e60_1009
  pycparser                  pkgs/main::pycparser-2.20-py_2 --> conda-forge::pycparser-2.21-pyhd8ed1ab_0
  pyopenssl          pkgs/main::pyopenssl-20.0.1-pyhd3eb1b~ --> conda-forge::pyopenssl-22.0.0-pyhd8ed1ab_0
  pysocks            pkgs/main::pysocks-1.7.1-py39h06a4308~ --> conda-forge::pysocks-1.7.1-py39hf3d152e_4
  python                 pkgs/main::python-3.9.5-h12debd9_4 --> conda-forge::python-3.9.10-hc74c709_2_cpython
  requests           pkgs/main::requests-2.25.1-pyhd3eb1b0~ --> conda-forge::requests-2.27.1-pyhd8ed1ab_0
  setuptools         pkgs/main::setuptools-52.0.0-py39h06a~ --> conda-forge::setuptools-60.6.0-py39hf3d152e_0
  sqlite                pkgs/main::sqlite-3.36.0-hc218d9a_0 --> conda-forge::sqlite-3.37.0-h9cd32fc_0
  tk                        pkgs/main::tk-8.6.10-hbc83047_0 --> conda-forge::tk-8.6.11-h27826a3_1
  tqdm                  pkgs/main::tqdm-4.61.2-pyhd3eb1b0_1 --> conda-forge::tqdm-4.62.3-pyhd8ed1ab_0
  tzdata                 pkgs/main::tzdata-2021a-h52ac0ba_0 --> conda-forge::tzdata-2021e-he74cb21_0
  urllib3            pkgs/main::urllib3-1.26.6-pyhd3eb1b0_1 --> conda-forge::urllib3-1.26.8-pyhd8ed1ab_1
  wheel                pkgs/main::wheel-0.36.2-pyhd3eb1b0_0 --> conda-forge::wheel-0.37.1-pyhd8ed1ab_0
  xz                         pkgs/main::xz-5.2.5-h7b6447c_0 --> conda-forge::xz-5.2.5-h516909a_1
  yaml                     pkgs/main::yaml-0.2.5-h7b6447c_0 --> conda-forge::yaml-0.2.5-h7f98852_2
  zlib                    pkgs/main::zlib-1.2.11-h7b6447c_3 --> conda-forge::zlib-1.2.11-h36c2ea0_1013

The following packages will be SUPERSEDED by a higher-priority channel:

  _libgcc_mutex           pkgs/main::_libgcc_mutex-0.1-main --> conda-forge::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex                                   pkgs/main --> conda-forge
  brotlipy           pkgs/main::brotlipy-0.7.0-py39h27cfd2~ --> conda-forge::brotlipy-0.7.0-py39h3811e60_1003
  conda-package-han~ pkgs/main::conda-package-handling-1.7~ --> conda-forge::conda-package-handling-1.7.3-py39h3811e60_1
  readline               pkgs/main::readline-8.1-h27cfd23_0 --> conda-forge::readline-8.1-h46c0cb4_0
  ruamel_yaml        pkgs/main::ruamel_yaml-0.15.100-py39h~ --> conda-forge::ruamel_yaml-0.15.80-py39h3811e60_1006
  six                    pkgs/main::six-1.16.0-pyhd3eb1b0_0 --> conda-forge::six-1.16.0-pyh6c4a22f_0



Downloading and Extracting Packages

pycosat-0.6.3        | 107 KB    |            |   0% 
pycosat-0.6.3        | 107 KB    | #4         |  15% 
pycosat-0.6.3        | 107 KB    | ########## | 100% 
pycosat-0.6.3        | 107 KB    | ########## | 100% 

cffi-1.15.0          | 227 KB    |            |   0% 
cffi-1.15.0          | 227 KB    | ########## | 100% 
cffi-1.15.0          | 227 KB    | ########## | 100% 

urllib3-1.26.8       | 100 KB    |            |   0% 
urllib3-1.26.8       | 100 KB    | ########## | 100% 
urllib3-1.26.8       | 100 KB    | ########## | 100% 

certifi-2021.10.8    | 145 KB    |            |   0% 
certifi-2021.10.8    | 145 KB    | ########## | 100% 
certifi-2021.10.8    | 145 KB    | ########## | 100% 

pip-22.0.2           | 1.5 MB    |            |   0% 
pip-22.0.2           | 1.5 MB    | ########## | 100% 
pip-22.0.2           | 1.5 MB    | ########## | 100% 

setuptools-60.6.0    | 1.0 MB    |            |   0% 
setuptools-60.6.0    | 1.0 MB    | ########## | 100% 
setuptools-60.6.0    | 1.0 MB    | ########## | 100% 

pysocks-1.7.1        | 28 KB     |            |   0% 
pysocks-1.7.1        | 28 KB     | ########## | 100% 
pysocks-1.7.1        | 28 KB     | ########## | 100% 

idna-3.3             | 55 KB     |            |   0% 
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idna-3.3             | 55 KB     | ########## | 100% 

brotlipy-0.7.0       | 342 KB    |            |   0% 
brotlipy-0.7.0       | 342 KB    | ########## | 100% 
brotlipy-0.7.0       | 342 KB    | ########## | 100% 

python-3.9.10        | 27.6 MB   |            |   0% 
python-3.9.10        | 27.6 MB   |            |   1% 
python-3.9.10        | 27.6 MB   | 3          |   4% 
python-3.9.10        | 27.6 MB   | 9          |  10% 
python-3.9.10        | 27.6 MB   | #3         |  13% 
python-3.9.10        | 27.6 MB   | ##3        |  23% 
python-3.9.10        | 27.6 MB   | ###2       |  32% 
python-3.9.10        | 27.6 MB   | ####6      |  46% 
python-3.9.10        | 27.6 MB   | #####8     |  59% 
python-3.9.10        | 27.6 MB   | ########6  |  86% 
python-3.9.10        | 27.6 MB   | ########## | 100% 

pyopenssl-22.0.0     | 49 KB     |            |   0% 
pyopenssl-22.0.0     | 49 KB     | ########## | 100% 
pyopenssl-22.0.0     | 49 KB     | ########## | 100% 

_libgcc_mutex-0.1    | 3 KB      |            |   0% 
_libgcc_mutex-0.1    | 3 KB      | ########## | 100% 
_libgcc_mutex-0.1    | 3 KB      | ########## | 100% 

libgcc-ng-11.2.0     | 904 KB    |            |   0% 
libgcc-ng-11.2.0     | 904 KB    | ########## | 100% 
libgcc-ng-11.2.0     | 904 KB    | ########## | 100% 

ruamel_yaml-0.15.80  | 268 KB    |            |   0% 
ruamel_yaml-0.15.80  | 268 KB    | 5          |   6% 
ruamel_yaml-0.15.80  | 268 KB    | ########## | 100% 
ruamel_yaml-0.15.80  | 268 KB    | ########## | 100% 

_openmp_mutex-4.5    | 22 KB     |            |   0% 
_openmp_mutex-4.5    | 22 KB     | ########## | 100% 
_openmp_mutex-4.5    | 22 KB     | ########## | 100% 

libgomp-11.2.0       | 426 KB    |            |   0% 
libgomp-11.2.0       | 426 KB    | ########## | 100% 
libgomp-11.2.0       | 426 KB    | ########## | 100% 

colorama-0.4.4       | 18 KB     |            |   0% 
colorama-0.4.4       | 18 KB     | ########## | 100% 
colorama-0.4.4       | 18 KB     | ########## | 100% 

pycparser-2.21       | 100 KB    |            |   0% 
pycparser-2.21       | 100 KB    | ########## | 100% 
pycparser-2.21       | 100 KB    | ########## | 100% 

charset-normalizer-2 | 35 KB     |            |   0% 
charset-normalizer-2 | 35 KB     | ########## | 100% 
charset-normalizer-2 | 35 KB     | ########## | 100% 

tzdata-2021e         | 121 KB    |            |   0% 
tzdata-2021e         | 121 KB    | #3         |  13% 
tzdata-2021e         | 121 KB    | ########## | 100% 
tzdata-2021e         | 121 KB    | ########## | 100% 

requests-2.27.1      | 53 KB     |            |   0% 
requests-2.27.1      | 53 KB     | ########## | 100% 
requests-2.27.1      | 53 KB     | ########## | 100% 

tqdm-4.62.3          | 80 KB     |            |   0% 
tqdm-4.62.3          | 80 KB     | ########## | 100% 
tqdm-4.62.3          | 80 KB     | ########## | 100% 

ncurses-6.3          | 1012 KB   |            |   0% 
ncurses-6.3          | 1012 KB   | ########## | 100% 
ncurses-6.3          | 1012 KB   | ########## | 100% 

python_abi-3.9       | 4 KB      |            |   0% 
python_abi-3.9       | 4 KB      | ########## | 100% 
python_abi-3.9       | 4 KB      | ########## | 100% 

openssl-3.0.0        | 2.9 MB    |            |   0% 
openssl-3.0.0        | 2.9 MB    | #########5 |  96% 
openssl-3.0.0        | 2.9 MB    | ########## | 100% 

conda-package-handli | 1005 KB   |            |   0% 
conda-package-handli | 1005 KB   | 1          |   2% 
conda-package-handli | 1005 KB   | ########## | 100% 
conda-package-handli | 1005 KB   | ########## | 100% 

cryptography-36.0.0  | 1.3 MB    |            |   0% 
cryptography-36.0.0  | 1.3 MB    | 1          |   1% 
cryptography-36.0.0  | 1.3 MB    | ########## | 100% 
cryptography-36.0.0  | 1.3 MB    | ########## | 100% 

conda-4.11.0         | 16.8 MB   |            |   0% 
conda-4.11.0         | 16.8 MB   |            |   0% 
conda-4.11.0         | 16.8 MB   | 4          |   4% 
conda-4.11.0         | 16.8 MB   | 9          |   9% 
conda-4.11.0         | 16.8 MB   | #8         |  19% 
conda-4.11.0         | 16.8 MB   | ###7       |  37% 
conda-4.11.0         | 16.8 MB   | ######     |  60% 
conda-4.11.0         | 16.8 MB   | #######7   |  77% 
conda-4.11.0         | 16.8 MB   | ########## | 100% 
conda-4.11.0         | 16.8 MB   | ########## | 100% 

yaml-0.2.5           | 87 KB     |            |   0% 
yaml-0.2.5           | 87 KB     | ########## | 100% 
yaml-0.2.5           | 87 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Requirement already satisfied: pip in ./CMakeFiles/miniconda/install/lib/python3.9/site-packages (22.0.2)
Collecting setuptools==47.3.1
  Using cached setuptools-47.3.1-py3-none-any.whl (582 kB)
Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 60.6.0
    Uninstalling setuptools-60.6.0:
      Successfully uninstalled setuptools-60.6.0
Successfully installed setuptools-47.3.1
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install

  added / updated specs:
    - nomkl


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    nomkl-1.0                  |       h5ca1d4c_0           4 KB  conda-forge
    ------------------------------------------------------------
                                           Total:           4 KB

The following NEW packages will be INSTALLED:

  nomkl              conda-forge/noarch::nomkl-1.0-h5ca1d4c_0



Downloading and Extracting Packages

nomkl-1.0            | 4 KB      |            |   0% 
nomkl-1.0            | 4 KB      | ########## | 100% 
nomkl-1.0            | 4 KB      | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install

  added / updated specs:
    - f90nml


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    f90nml-1.3.1               |     pyhd8ed1ab_0          28 KB  conda-forge
    ------------------------------------------------------------
                                           Total:          28 KB

The following NEW packages will be INSTALLED:

  f90nml             conda-forge/noarch::f90nml-1.3.1-pyhd8ed1ab_0



Downloading and Extracting Packages

f90nml-1.3.1         | 28 KB     |            |   0% 
f90nml-1.3.1         | 28 KB     | #####6     |  56% 
f90nml-1.3.1         | 28 KB     | ########## | 100% 
f90nml-1.3.1         | 28 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install

  added / updated specs:
    - pandas


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    libblas-3.9.0              |13_linux64_openblas          12 KB  conda-forge
    libcblas-3.9.0             |13_linux64_openblas          12 KB  conda-forge
    libgfortran-ng-11.2.0      |      h69a702a_12          19 KB  conda-forge
    libgfortran5-11.2.0        |      h5c6108e_12         1.7 MB  conda-forge
    liblapack-3.9.0            |13_linux64_openblas          12 KB  conda-forge
    libstdcxx-ng-11.2.0        |      he4da1e4_12         4.2 MB  conda-forge
    numpy-1.22.1               |   py39h91f2184_0        19.3 MB  conda-forge
    pandas-1.4.0               |   py39hde0f152_0        44.1 MB  conda-forge
    pytz-2021.3                |     pyhd8ed1ab_0         242 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        69.6 MB

The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-64::libblas-3.9.0-13_linux64_openblas
  libcblas           conda-forge/linux-64::libcblas-3.9.0-13_linux64_openblas
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-11.2.0-h69a702a_12
  libgfortran5       conda-forge/linux-64::libgfortran5-11.2.0-h5c6108e_12
  liblapack          conda-forge/linux-64::liblapack-3.9.0-13_linux64_openblas
  libopenblas        conda-forge/linux-64::libopenblas-0.3.18-pthreads_h8fe5266_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-11.2.0-he4da1e4_12
  numpy              conda-forge/linux-64::numpy-1.22.1-py39h91f2184_0
  pandas             conda-forge/linux-64::pandas-1.4.0-py39hde0f152_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
  pytz               conda-forge/noarch::pytz-2021.3-pyhd8ed1ab_0



Downloading and Extracting Packages

libgfortran5-11.2.0  | 1.7 MB    |            |   0% 
libgfortran5-11.2.0  | 1.7 MB    |            |   1% 
libgfortran5-11.2.0  | 1.7 MB    | ########## | 100% 
libgfortran5-11.2.0  | 1.7 MB    | ########## | 100% 

numpy-1.22.1         | 19.3 MB   |            |   0% 
numpy-1.22.1         | 19.3 MB   | ###        |  31% 
numpy-1.22.1         | 19.3 MB   | ########2  |  83% 
numpy-1.22.1         | 19.3 MB   | ########## | 100% 

libstdcxx-ng-11.2.0  | 4.2 MB    |            |   0% 
libstdcxx-ng-11.2.0  | 4.2 MB    | ########## | 100% 
libstdcxx-ng-11.2.0  | 4.2 MB    | ########## | 100% 

libcblas-3.9.0       | 12 KB     |            |   0% 
libcblas-3.9.0       | 12 KB     | ########## | 100% 
libcblas-3.9.0       | 12 KB     | ########## | 100% 

pytz-2021.3          | 242 KB    |            |   0% 
pytz-2021.3          | 242 KB    | ########## | 100% 
pytz-2021.3          | 242 KB    | ########## | 100% 

liblapack-3.9.0      | 12 KB     |            |   0% 
liblapack-3.9.0      | 12 KB     | ########## | 100% 
liblapack-3.9.0      | 12 KB     | ########## | 100% 

libblas-3.9.0        | 12 KB     |            |   0% 
libblas-3.9.0        | 12 KB     | ########## | 100% 
libblas-3.9.0        | 12 KB     | ########## | 100% 

pandas-1.4.0         | 44.1 MB   |            |   0% 
pandas-1.4.0         | 44.1 MB   | #6         |  17% 
pandas-1.4.0         | 44.1 MB   | ###4       |  35% 
pandas-1.4.0         | 44.1 MB   | #####2     |  53% 
pandas-1.4.0         | 44.1 MB   | #######4   |  75% 
pandas-1.4.0         | 44.1 MB   | #########3 |  94% 
pandas-1.4.0         | 44.1 MB   | ########## | 100% 

libgfortran-ng-11.2. | 19 KB     |            |   0% 
libgfortran-ng-11.2. | 19 KB     | ########## | 100% 
libgfortran-ng-11.2. | 19 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install

  added / updated specs:
    - conda-build
    - cython=0.29
    - ipython
    - notebook
    - numpy
    - pytest
    - scipy


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    argon2-cffi-21.3.0         |     pyhd8ed1ab_0          15 KB  conda-forge
    argon2-cffi-bindings-21.2.0|   py39h3811e60_1          98 KB  conda-forge
    asttokens-2.0.5            |     pyhd8ed1ab_0          21 KB  conda-forge
    attrs-21.4.0               |     pyhd8ed1ab_0          49 KB  conda-forge
    backcall-0.2.0             |     pyh9f0ad1d_0          13 KB  conda-forge
    backports-1.0              |             py_2           4 KB  conda-forge
    backports.functools_lru_cache-1.6.4|     pyhd8ed1ab_0           9 KB  conda-forge
    beautifulsoup4-4.10.0      |     pyha770c72_0          77 KB  conda-forge
    black-22.1.0               |     pyhd8ed1ab_0         124 KB  conda-forge
    bleach-4.1.0               |     pyhd8ed1ab_0         121 KB  conda-forge
    chardet-4.0.0              |   py39hf3d152e_2         198 KB  conda-forge
    click-8.0.3                |   py39hf3d152e_1         147 KB  conda-forge
    conda-build-3.21.7         |   py39hf3d152e_0         564 KB  conda-forge
    cython-0.29.27             |   py39he80948d_0         6.1 MB  conda-forge
    dataclasses-0.8            |     pyhc8e2a94_3          10 KB  conda-forge
    debugpy-1.5.1              |   py39he80948d_0         2.0 MB  conda-forge
    decorator-5.1.1            |     pyhd8ed1ab_0          12 KB  conda-forge
    defusedxml-0.7.1           |     pyhd8ed1ab_0          23 KB  conda-forge
    entrypoints-0.3            |  pyhd8ed1ab_1003           8 KB  conda-forge
    executing-0.8.2            |     pyhd8ed1ab_0          18 KB  conda-forge
    filelock-3.4.2             |     pyhd8ed1ab_1          12 KB  conda-forge
    flit-core-3.6.0            |     pyhd8ed1ab_0          42 KB  conda-forge
    glob2-0.7                  |             py_0          11 KB  conda-forge
    icu-69.1                   |       h9c3ff4c_0        13.2 MB  conda-forge
    importlib-metadata-4.10.1  |   py39hf3d152e_0          33 KB  conda-forge
    importlib_resources-5.4.0  |     pyhd8ed1ab_0          21 KB  conda-forge
    iniconfig-1.1.1            |     pyh9f0ad1d_0           8 KB  conda-forge
    ipykernel-6.7.0            |   py39hef51801_0         180 KB  conda-forge
    ipython-8.0.1              |   py39hf3d152e_0         1.1 MB  conda-forge
    ipython_genutils-0.2.0     |             py_1          21 KB  conda-forge
    jedi-0.18.1                |   py39hf3d152e_0         992 KB  conda-forge
    jinja2-3.0.3               |     pyhd8ed1ab_0          99 KB  conda-forge
    jsonschema-4.4.0           |     pyhd8ed1ab_0          57 KB  conda-forge
    jupyter_client-7.1.2       |     pyhd8ed1ab_0          90 KB  conda-forge
    jupyter_core-4.9.1         |   py39hf3d152e_1          80 KB  conda-forge
    jupyterlab_pygments-0.1.2  |     pyh9f0ad1d_0           8 KB  conda-forge
    libarchive-3.5.2           |       hed592e5_1         1.6 MB  conda-forge
    liblief-0.11.5             |       h9c3ff4c_1         2.2 MB  conda-forge
    libsodium-1.0.18           |       h36c2ea0_1         366 KB  conda-forge
    libxml2-2.9.12             |       h885dcf4_1         760 KB  conda-forge
    lzo-2.10                   |    h516909a_1000         314 KB  conda-forge
    markupsafe-2.0.1           |   py39h3811e60_1          22 KB  conda-forge
    matplotlib-inline-0.1.3    |     pyhd8ed1ab_0          11 KB  conda-forge
    mistune-0.8.4              |py39h3811e60_1005          54 KB  conda-forge
    mypy_extensions-0.4.3      |   py39hf3d152e_4          10 KB  conda-forge
    nbclient-0.5.10            |     pyhd8ed1ab_1          63 KB  conda-forge
    nbconvert-6.4.1            |   py39hf3d152e_0         561 KB  conda-forge
    nbformat-5.1.3             |     pyhd8ed1ab_0          47 KB  conda-forge
    nest-asyncio-1.5.4         |     pyhd8ed1ab_0           9 KB  conda-forge
    notebook-6.4.8             |     pyha770c72_0         6.3 MB  conda-forge
    packaging-21.3             |     pyhd8ed1ab_0          36 KB  conda-forge
    pandoc-2.17.1.1            |       ha770c72_0        11.9 MB  conda-forge
    pandocfilters-1.5.0        |     pyhd8ed1ab_0          11 KB  conda-forge
    parso-0.8.3                |     pyhd8ed1ab_0          69 KB  conda-forge
    patchelf-0.14.3            |       h58526e2_0          93 KB  conda-forge
    pathspec-0.9.0             |     pyhd8ed1ab_0          31 KB  conda-forge
    pexpect-4.8.0              |     pyh9f0ad1d_2          47 KB  conda-forge
    pickleshare-0.7.5          |          py_1003           9 KB  conda-forge
    pkginfo-1.8.2              |     pyhd8ed1ab_0          23 KB  conda-forge
    platformdirs-2.3.0         |     pyhd8ed1ab_0          14 KB  conda-forge
    pluggy-1.0.0               |   py39hf3d152e_2          25 KB  conda-forge
    prometheus_client-0.13.1   |     pyhd8ed1ab_0          47 KB  conda-forge
    prompt-toolkit-3.0.26      |     pyha770c72_0         250 KB  conda-forge
    psutil-5.9.0               |   py39h3811e60_0         398 KB  conda-forge
    ptyprocess-0.7.0           |     pyhd3deb0d_0          16 KB  conda-forge
    pure_eval-0.2.2            |     pyhd8ed1ab_0          14 KB  conda-forge
    py-1.11.0                  |     pyh6c4a22f_0          74 KB  conda-forge
    py-lief-0.11.5             |   py39he80948d_1         1.5 MB  conda-forge
    pygments-2.11.2            |     pyhd8ed1ab_0         796 KB  conda-forge
    pyparsing-3.0.7            |     pyhd8ed1ab_0          79 KB  conda-forge
    pyrsistent-0.18.1          |   py39h3811e60_0         128 KB  conda-forge
    pytest-6.2.5               |   py39hf3d152e_2         433 KB  conda-forge
    python-libarchive-c-4.0    |   py39hf3d152e_0          62 KB  conda-forge
    pyyaml-6.0                 |   py39h3811e60_3         192 KB  conda-forge
    pyzmq-22.3.0               |   py39h37b5a0c_1         537 KB  conda-forge
    ripgrep-13.0.0             |       habb4d0f_1         1.7 MB  conda-forge
    scipy-1.7.3                |   py39hee8e79c_0        22.0 MB  conda-forge
    send2trash-1.8.0           |     pyhd8ed1ab_0          17 KB  conda-forge
    soupsieve-2.3.1            |     pyhd8ed1ab_0          33 KB  conda-forge
    stack_data-0.1.4           |     pyhd8ed1ab_0          21 KB  conda-forge
    terminado-0.13.1           |   py39hf3d152e_0          27 KB  conda-forge
    testpath-0.5.0             |     pyhd8ed1ab_0          86 KB  conda-forge
    toml-0.10.2                |     pyhd8ed1ab_0          18 KB  conda-forge
    tomli-2.0.0                |     pyhd8ed1ab_1          15 KB  conda-forge
    tornado-6.1                |   py39h3811e60_2         646 KB  conda-forge
    traitlets-5.1.1            |     pyhd8ed1ab_0          82 KB  conda-forge
    typed-ast-1.5.2            |   py39h3811e60_0         811 KB  conda-forge
    typing_extensions-4.0.1    |     pyha770c72_0          26 KB  conda-forge
    wcwidth-0.2.5              |     pyh9f0ad1d_2          33 KB  conda-forge
    webencodings-0.5.1         |             py_1          12 KB  conda-forge
    zeromq-4.3.4               |       h9c3ff4c_1         351 KB  conda-forge
    zipp-3.7.0                 |     pyhd8ed1ab_0          12 KB  conda-forge
    zstd-1.5.2                 |       ha95c52a_0         458 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        80.8 MB

The following NEW packages will be INSTALLED:

  argon2-cffi        conda-forge/noarch::argon2-cffi-21.3.0-pyhd8ed1ab_0
  argon2-cffi-bindi~ conda-forge/linux-64::argon2-cffi-bindings-21.2.0-py39h3811e60_1
  asttokens          conda-forge/noarch::asttokens-2.0.5-pyhd8ed1ab_0
  attrs              conda-forge/noarch::attrs-21.4.0-pyhd8ed1ab_0
  backcall           conda-forge/noarch::backcall-0.2.0-pyh9f0ad1d_0
  backports          conda-forge/noarch::backports-1.0-py_2
  backports.functoo~ conda-forge/noarch::backports.functools_lru_cache-1.6.4-pyhd8ed1ab_0
  beautifulsoup4     conda-forge/noarch::beautifulsoup4-4.10.0-pyha770c72_0
  black              conda-forge/noarch::black-22.1.0-pyhd8ed1ab_0
  bleach             conda-forge/noarch::bleach-4.1.0-pyhd8ed1ab_0
  chardet            conda-forge/linux-64::chardet-4.0.0-py39hf3d152e_2
  click              conda-forge/linux-64::click-8.0.3-py39hf3d152e_1
  conda-build        conda-forge/linux-64::conda-build-3.21.7-py39hf3d152e_0
  cython             conda-forge/linux-64::cython-0.29.27-py39he80948d_0
  dataclasses        conda-forge/noarch::dataclasses-0.8-pyhc8e2a94_3
  debugpy            conda-forge/linux-64::debugpy-1.5.1-py39he80948d_0
  decorator          conda-forge/noarch::decorator-5.1.1-pyhd8ed1ab_0
  defusedxml         conda-forge/noarch::defusedxml-0.7.1-pyhd8ed1ab_0
  entrypoints        conda-forge/noarch::entrypoints-0.3-pyhd8ed1ab_1003
  executing          conda-forge/noarch::executing-0.8.2-pyhd8ed1ab_0
  filelock           conda-forge/noarch::filelock-3.4.2-pyhd8ed1ab_1
  flit-core          conda-forge/noarch::flit-core-3.6.0-pyhd8ed1ab_0
  glob2              conda-forge/noarch::glob2-0.7-py_0
  icu                conda-forge/linux-64::icu-69.1-h9c3ff4c_0
  importlib-metadata conda-forge/linux-64::importlib-metadata-4.10.1-py39hf3d152e_0
  importlib_resourc~ conda-forge/noarch::importlib_resources-5.4.0-pyhd8ed1ab_0
  iniconfig          conda-forge/noarch::iniconfig-1.1.1-pyh9f0ad1d_0
  ipykernel          conda-forge/linux-64::ipykernel-6.7.0-py39hef51801_0
  ipython            conda-forge/linux-64::ipython-8.0.1-py39hf3d152e_0
  ipython_genutils   conda-forge/noarch::ipython_genutils-0.2.0-py_1
  jedi               conda-forge/linux-64::jedi-0.18.1-py39hf3d152e_0
  jinja2             conda-forge/noarch::jinja2-3.0.3-pyhd8ed1ab_0
  jsonschema         conda-forge/noarch::jsonschema-4.4.0-pyhd8ed1ab_0
  jupyter_client     conda-forge/noarch::jupyter_client-7.1.2-pyhd8ed1ab_0
  jupyter_core       conda-forge/linux-64::jupyter_core-4.9.1-py39hf3d152e_1
  jupyterlab_pygmen~ conda-forge/noarch::jupyterlab_pygments-0.1.2-pyh9f0ad1d_0
  libarchive         conda-forge/linux-64::libarchive-3.5.2-hed592e5_1
  libiconv           conda-forge/linux-64::libiconv-1.16-h516909a_0
  liblief            conda-forge/linux-64::liblief-0.11.5-h9c3ff4c_1
  libsodium          conda-forge/linux-64::libsodium-1.0.18-h36c2ea0_1
  libxml2            conda-forge/linux-64::libxml2-2.9.12-h885dcf4_1
  lz4-c              conda-forge/linux-64::lz4-c-1.9.3-h9c3ff4c_1
  lzo                conda-forge/linux-64::lzo-2.10-h516909a_1000
  markupsafe         conda-forge/linux-64::markupsafe-2.0.1-py39h3811e60_1
  matplotlib-inline  conda-forge/noarch::matplotlib-inline-0.1.3-pyhd8ed1ab_0
  mistune            conda-forge/linux-64::mistune-0.8.4-py39h3811e60_1005
  mypy_extensions    conda-forge/linux-64::mypy_extensions-0.4.3-py39hf3d152e_4
  nbclient           conda-forge/noarch::nbclient-0.5.10-pyhd8ed1ab_1
  nbconvert          conda-forge/linux-64::nbconvert-6.4.1-py39hf3d152e_0
  nbformat           conda-forge/noarch::nbformat-5.1.3-pyhd8ed1ab_0
  nest-asyncio       conda-forge/noarch::nest-asyncio-1.5.4-pyhd8ed1ab_0
  notebook           conda-forge/noarch::notebook-6.4.8-pyha770c72_0
  packaging          conda-forge/noarch::packaging-21.3-pyhd8ed1ab_0
  pandoc             conda-forge/linux-64::pandoc-2.17.1.1-ha770c72_0
  pandocfilters      conda-forge/noarch::pandocfilters-1.5.0-pyhd8ed1ab_0
  parso              conda-forge/noarch::parso-0.8.3-pyhd8ed1ab_0
  patchelf           conda-forge/linux-64::patchelf-0.14.3-h58526e2_0
  pathspec           conda-forge/noarch::pathspec-0.9.0-pyhd8ed1ab_0
  pexpect            conda-forge/noarch::pexpect-4.8.0-pyh9f0ad1d_2
  pickleshare        conda-forge/noarch::pickleshare-0.7.5-py_1003
  pkginfo            conda-forge/noarch::pkginfo-1.8.2-pyhd8ed1ab_0
  platformdirs       conda-forge/noarch::platformdirs-2.3.0-pyhd8ed1ab_0
  pluggy             conda-forge/linux-64::pluggy-1.0.0-py39hf3d152e_2
  prometheus_client  conda-forge/noarch::prometheus_client-0.13.1-pyhd8ed1ab_0
  prompt-toolkit     conda-forge/noarch::prompt-toolkit-3.0.26-pyha770c72_0
  psutil             conda-forge/linux-64::psutil-5.9.0-py39h3811e60_0
  ptyprocess         conda-forge/noarch::ptyprocess-0.7.0-pyhd3deb0d_0
  pure_eval          conda-forge/noarch::pure_eval-0.2.2-pyhd8ed1ab_0
  py                 conda-forge/noarch::py-1.11.0-pyh6c4a22f_0
  py-lief            conda-forge/linux-64::py-lief-0.11.5-py39he80948d_1
  pygments           conda-forge/noarch::pygments-2.11.2-pyhd8ed1ab_0
  pyparsing          conda-forge/noarch::pyparsing-3.0.7-pyhd8ed1ab_0
  pyrsistent         conda-forge/linux-64::pyrsistent-0.18.1-py39h3811e60_0
  pytest             conda-forge/linux-64::pytest-6.2.5-py39hf3d152e_2
  python-libarchive~ conda-forge/linux-64::python-libarchive-c-4.0-py39hf3d152e_0
  pyyaml             conda-forge/linux-64::pyyaml-6.0-py39h3811e60_3
  pyzmq              conda-forge/linux-64::pyzmq-22.3.0-py39h37b5a0c_1
  ripgrep            conda-forge/linux-64::ripgrep-13.0.0-habb4d0f_1
  scipy              conda-forge/linux-64::scipy-1.7.3-py39hee8e79c_0
  send2trash         conda-forge/noarch::send2trash-1.8.0-pyhd8ed1ab_0
  soupsieve          conda-forge/noarch::soupsieve-2.3.1-pyhd8ed1ab_0
  stack_data         conda-forge/noarch::stack_data-0.1.4-pyhd8ed1ab_0
  terminado          conda-forge/linux-64::terminado-0.13.1-py39hf3d152e_0
  testpath           conda-forge/noarch::testpath-0.5.0-pyhd8ed1ab_0
  toml               conda-forge/noarch::toml-0.10.2-pyhd8ed1ab_0
  tomli              conda-forge/noarch::tomli-2.0.0-pyhd8ed1ab_1
  tornado            conda-forge/linux-64::tornado-6.1-py39h3811e60_2
  traitlets          conda-forge/noarch::traitlets-5.1.1-pyhd8ed1ab_0
  typed-ast          conda-forge/linux-64::typed-ast-1.5.2-py39h3811e60_0
  typing_extensions  conda-forge/noarch::typing_extensions-4.0.1-pyha770c72_0
  wcwidth            conda-forge/noarch::wcwidth-0.2.5-pyh9f0ad1d_2
  webencodings       conda-forge/noarch::webencodings-0.5.1-py_1
  zeromq             conda-forge/linux-64::zeromq-4.3.4-h9c3ff4c_1
  zipp               conda-forge/noarch::zipp-3.7.0-pyhd8ed1ab_0
  zstd               conda-forge/linux-64::zstd-1.5.2-ha95c52a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
Collecting matplotlib
  Downloading matplotlib-3.5.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (11.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.2/11.2 MB 2.4 MB/s eta 0:00:00
Collecting fonttools>=4.22.0
  Downloading fonttools-4.29.1-py3-none-any.whl (895 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 895.5/895.5 KB 884.6 kB/s eta 0:00:00
Requirement already satisfied: pyparsing>=2.2.1 in ./CMakeFiles/miniconda/install/lib/python3.9/site-packages (from matplotlib) (3.0.7)
Collecting kiwisolver>=1.0.1
  Downloading kiwisolver-1.3.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 922.8 kB/s eta 0:00:00
Requirement already satisfied: python-dateutil>=2.7 in ./CMakeFiles/miniconda/install/lib/python3.9/site-packages (from matplotlib) (2.8.2)
Collecting cycler>=0.10
  Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB)
Requirement already satisfied: numpy>=1.17 in ./CMakeFiles/miniconda/install/lib/python3.9/site-packages (from matplotlib) (1.22.1)
Collecting pillow>=6.2.0
  Downloading Pillow-9.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.3/4.3 MB 1.8 MB/s eta 0:00:00
Requirement already satisfied: packaging>=20.0 in ./CMakeFiles/miniconda/install/lib/python3.9/site-packages (from matplotlib) (21.3)
Requirement already satisfied: six>=1.5 in ./CMakeFiles/miniconda/install/lib/python3.9/site-packages (from python-dateutil>=2.7->matplotlib) (1.16.0)
Installing collected packages: pillow, kiwisolver, fonttools, cycler, matplotlib
Successfully installed cycler-0.11.0 fonttools-4.29.1 kiwisolver-1.3.2 matplotlib-3.5.1 pillow-9.0.0
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
Cache location: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/pkgs
Will remove the following tarballs:

/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/pkgs
--------------------------------------------------------------------------
ptyprocess-0.7.0-pyhd3deb0d_0.tar.bz2         16 KB
pathspec-0.9.0-pyhd8ed1ab_0.tar.bz2           31 KB
nest-asyncio-1.5.4-pyhd8ed1ab_0.tar.bz2        9 KB
python-3.9.5-h12debd9_4.tar.bz2             22.6 MB
certifi-2021.10.8-py39hf3d152e_1.tar.bz2     145 KB
tqdm-4.62.3-pyhd8ed1ab_0.tar.bz2              80 KB
pip-22.0.2-pyhd8ed1ab_0.tar.bz2              1.5 MB
backcall-0.2.0-pyh9f0ad1d_0.tar.bz2           13 KB
openssl-1.1.1k-h27cfd23_0.conda              2.5 MB
cython-0.29.27-py39he80948d_0.tar.bz2        6.1 MB
zstd-1.5.2-ha95c52a_0.tar.bz2                458 KB
toml-0.10.2-pyhd8ed1ab_0.tar.bz2              18 KB
ipython-8.0.1-py39hf3d152e_0.tar.bz2         1.1 MB
webencodings-0.5.1-py_1.tar.bz2               12 KB
ncurses-6.2-he6710b0_1.conda                 817 KB
prompt-toolkit-3.0.26-pyha770c72_0.tar.bz2     250 KB
pyyaml-6.0-py39h3811e60_3.tar.bz2            192 KB
urllib3-1.26.8-pyhd8ed1ab_1.tar.bz2          100 KB
pysocks-1.7.1-py39hf3d152e_4.tar.bz2          28 KB
urllib3-1.26.6-pyhd3eb1b0_1.conda            112 KB
requests-2.27.1-pyhd8ed1ab_0.tar.bz2          53 KB
ca-certificates-2021.7.5-h06a4308_1.conda     113 KB
libsodium-1.0.18-h36c2ea0_1.tar.bz2          366 KB
iniconfig-1.1.1-pyh9f0ad1d_0.tar.bz2           8 KB
tqdm-4.61.2-pyhd3eb1b0_1.conda                83 KB
scipy-1.7.3-py39hee8e79c_0.tar.bz2          22.0 MB
yaml-0.2.5-h7b6447c_0.conda                   75 KB
pyzmq-22.3.0-py39h37b5a0c_1.tar.bz2          537 KB
certifi-2021.5.30-py39h06a4308_0.conda       139 KB
chardet-4.0.0-py39hf3d152e_2.tar.bz2         198 KB
traitlets-5.1.1-pyhd8ed1ab_0.tar.bz2          82 KB
libblas-3.9.0-13_linux64_openblas.tar.bz2      12 KB
zipp-3.7.0-pyhd8ed1ab_0.tar.bz2               12 KB
readline-8.1-h27cfd23_0.conda                362 KB
ipython_genutils-0.2.0-py_1.tar.bz2           21 KB
pyopenssl-22.0.0-pyhd8ed1ab_0.tar.bz2         49 KB
idna-3.3-pyhd8ed1ab_0.tar.bz2                 55 KB
argon2-cffi-21.3.0-pyhd8ed1ab_0.tar.bz2       15 KB
defusedxml-0.7.1-pyhd8ed1ab_0.tar.bz2         23 KB
pyrsistent-0.18.1-py39h3811e60_0.tar.bz2     128 KB
parso-0.8.3-pyhd8ed1ab_0.tar.bz2              69 KB
pycparser-2.21-pyhd8ed1ab_0.tar.bz2          100 KB
beautifulsoup4-4.10.0-pyha770c72_0.tar.bz2      77 KB
importlib_resources-5.4.0-pyhd8ed1ab_0.tar.bz2      21 KB
f90nml-1.3.1-pyhd8ed1ab_0.tar.bz2             28 KB
soupsieve-2.3.1-pyhd8ed1ab_0.tar.bz2          33 KB
tornado-6.1-py39h3811e60_2.tar.bz2           646 KB
python-libarchive-c-4.0-py39hf3d152e_0.tar.bz2      62 KB
conda-package-handling-1.7.3-py39h27cfd23_1.conda     884 KB
conda-package-handling-1.7.3-py39h3811e60_1.tar.bz2    1005 KB
pandas-1.4.0-py39hde0f152_0.tar.bz2         44.1 MB
libgcc-ng-11.2.0-h1d223b6_12.tar.bz2         904 KB
pip-21.1.3-py39h06a4308_0.conda              1.8 MB
jedi-0.18.1-py39hf3d152e_0.tar.bz2           992 KB
pytest-6.2.5-py39hf3d152e_2.tar.bz2          433 KB
mypy_extensions-0.4.3-py39hf3d152e_4.tar.bz2      10 KB
yaml-0.2.5-h7f98852_2.tar.bz2                 87 KB
decorator-5.1.1-pyhd8ed1ab_0.tar.bz2          12 KB
mistune-0.8.4-py39h3811e60_1005.tar.bz2       54 KB
tzdata-2021a-h52ac0ba_0.conda                108 KB
jupyterlab_pygments-0.1.2-pyh9f0ad1d_0.tar.bz2       8 KB
python_abi-3.9-2_cp39.tar.bz2                  4 KB
liblapack-3.9.0-13_linux64_openblas.tar.bz2      12 KB
pkginfo-1.8.2-pyhd8ed1ab_0.tar.bz2            23 KB
ruamel_yaml-0.15.80-py39h3811e60_1006.tar.bz2     268 KB
ld_impl_linux-64-2.35.1-h7274673_9.conda     586 KB
terminado-0.13.1-py39hf3d152e_0.tar.bz2       27 KB
jinja2-3.0.3-pyhd8ed1ab_0.tar.bz2             99 KB
libgcc-ng-9.3.0-h5101ec6_17.conda            4.8 MB
icu-69.1-h9c3ff4c_0.tar.bz2                 13.2 MB
cryptography-36.0.0-py39h9ce1e76_0.conda     1.3 MB
pygments-2.11.2-pyhd8ed1ab_0.tar.bz2         796 KB
conda-4.10.3-py39h06a4308_0.tar.bz2          3.1 MB
psutil-5.9.0-py39h3811e60_0.tar.bz2          398 KB
conda-4.11.0-py39hf3d152e_0.tar.bz2         16.8 MB
pytz-2021.3-pyhd8ed1ab_0.tar.bz2             242 KB
libarchive-3.5.2-hed592e5_1.tar.bz2          1.6 MB
lzo-2.10-h516909a_1000.tar.bz2               314 KB
_libgcc_mutex-0.1-conda_forge.tar.bz2          3 KB
wcwidth-0.2.5-pyh9f0ad1d_2.tar.bz2            33 KB
argon2-cffi-bindings-21.2.0-py39h3811e60_1.tar.bz2      98 KB
debugpy-1.5.1-py39he80948d_0.tar.bz2         2.0 MB
conda-build-3.21.7-py39hf3d152e_0.tar.bz2     564 KB
libgomp-9.3.0-h5101ec6_17.conda              311 KB
matplotlib-inline-0.1.3-pyhd8ed1ab_0.tar.bz2      11 KB
nbclient-0.5.10-pyhd8ed1ab_1.tar.bz2          63 KB
backports-1.0-py_2.tar.bz2                     4 KB
requests-2.25.1-pyhd3eb1b0_0.conda            52 KB
typing_extensions-4.0.1-pyha770c72_0.tar.bz2      26 KB
_libgcc_mutex-0.1-main.conda                   3 KB
sqlite-3.36.0-hc218d9a_0.conda               990 KB
attrs-21.4.0-pyhd8ed1ab_0.tar.bz2             49 KB
click-8.0.3-py39hf3d152e_1.tar.bz2           147 KB
nomkl-1.0-h5ca1d4c_0.tar.bz2                   4 KB
prometheus_client-0.13.1-pyhd8ed1ab_0.tar.bz2      47 KB
ripgrep-13.0.0-habb4d0f_1.tar.bz2            1.7 MB
libgfortran-ng-11.2.0-h69a702a_12.tar.bz2      19 KB
chardet-4.0.0-py39h06a4308_1003.conda        194 KB
libgfortran5-11.2.0-h5c6108e_12.tar.bz2      1.7 MB
ipykernel-6.7.0-py39hef51801_0.tar.bz2       180 KB
libxml2-2.9.12-h885dcf4_1.tar.bz2            760 KB
setuptools-60.6.0-py39hf3d152e_0.tar.bz2     1.0 MB
entrypoints-0.3-pyhd8ed1ab_1003.tar.bz2        8 KB
jsonschema-4.4.0-pyhd8ed1ab_0.tar.bz2         57 KB
patchelf-0.14.3-h58526e2_0.tar.bz2            93 KB
brotlipy-0.7.0-py39h27cfd23_1003.conda       324 KB
pycosat-0.6.3-py39h3811e60_1009.tar.bz2      107 KB
pure_eval-0.2.2-pyhd8ed1ab_0.tar.bz2          14 KB
typed-ast-1.5.2-py39h3811e60_0.tar.bz2       811 KB
libgomp-11.2.0-h1d223b6_12.tar.bz2           426 KB
nbformat-5.1.3-pyhd8ed1ab_0.tar.bz2           47 KB
packaging-21.3-pyhd8ed1ab_0.tar.bz2           36 KB
charset-normalizer-2.0.11-pyhd8ed1ab_0.tar.bz2      35 KB
py-lief-0.11.5-py39he80948d_1.tar.bz2        1.5 MB
filelock-3.4.2-pyhd8ed1ab_1.tar.bz2           12 KB
pandocfilters-1.5.0-pyhd8ed1ab_0.tar.bz2      11 KB
tk-8.6.10-hbc83047_0.conda                   3.0 MB
asttokens-2.0.5-pyhd8ed1ab_0.tar.bz2          21 KB
pluggy-1.0.0-py39hf3d152e_2.tar.bz2           25 KB
liblief-0.11.5-h9c3ff4c_1.tar.bz2            2.2 MB
libstdcxx-ng-11.2.0-he4da1e4_12.tar.bz2      4.2 MB
wheel-0.36.2-pyhd3eb1b0_0.conda               33 KB
importlib-metadata-4.10.1-py39hf3d152e_0.tar.bz2      33 KB
py-1.11.0-pyh6c4a22f_0.tar.bz2                74 KB
testpath-0.5.0-pyhd8ed1ab_0.tar.bz2           86 KB
_openmp_mutex-4.5-1_gnu.tar.bz2               22 KB
xz-5.2.5-h7b6447c_0.conda                    341 KB
bleach-4.1.0-pyhd8ed1ab_0.tar.bz2            121 KB
stack_data-0.1.4-pyhd8ed1ab_0.tar.bz2         21 KB
black-22.1.0-pyhd8ed1ab_0.tar.bz2            124 KB
setuptools-52.0.0-py39h06a4308_0.conda       724 KB
zeromq-4.3.4-h9c3ff4c_1.tar.bz2              351 KB
platformdirs-2.3.0-pyhd8ed1ab_0.tar.bz2       14 KB
six-1.16.0-pyhd3eb1b0_0.conda                 18 KB
markupsafe-2.0.1-py39h3811e60_1.tar.bz2       22 KB
cryptography-3.4.7-py39hd23ed53_0.conda      906 KB
openssl-3.0.0-h7f98852_2.tar.bz2             2.9 MB
backports.functools_lru_cache-1.6.4-pyhd8ed1ab_0.tar.bz2       9 KB
libffi-3.3-he6710b0_2.conda                   50 KB
tzdata-2021e-he74cb21_0.tar.bz2              121 KB
python-3.9.10-hc74c709_2_cpython.tar.bz2    27.6 MB
colorama-0.4.4-pyh9f0ad1d_0.tar.bz2           18 KB
idna-2.10-pyhd3eb1b0_0.tar.bz2                52 KB
zlib-1.2.11-h7b6447c_3.conda                 103 KB
libcblas-3.9.0-13_linux64_openblas.tar.bz2      12 KB
ruamel_yaml-0.15.100-py39h27cfd23_0.conda     260 KB
pycosat-0.6.3-py39h27cfd23_0.conda            82 KB
glob2-0.7-py_0.tar.bz2                        11 KB
pycparser-2.20-py_2.conda                     94 KB
pickleshare-0.7.5-py_1003.tar.bz2              9 KB
send2trash-1.8.0-pyhd8ed1ab_0.tar.bz2         17 KB
dataclasses-0.8-pyhc8e2a94_3.tar.bz2          10 KB
pexpect-4.8.0-pyh9f0ad1d_2.tar.bz2            47 KB
brotlipy-0.7.0-py39h3811e60_1003.tar.bz2     342 KB
tomli-2.0.0-pyhd8ed1ab_1.tar.bz2              15 KB
nbconvert-6.4.1-py39hf3d152e_0.tar.bz2       561 KB
pysocks-1.7.1-py39h06a4308_0.conda            31 KB
jupyter_client-7.1.2-pyhd8ed1ab_0.tar.bz2      90 KB
executing-0.8.2-pyhd8ed1ab_0.tar.bz2          18 KB
pandoc-2.17.1.1-ha770c72_0.tar.bz2          11.9 MB
flit-core-3.6.0-pyhd8ed1ab_0.tar.bz2          42 KB
numpy-1.22.1-py39h91f2184_0.tar.bz2         19.3 MB
notebook-6.4.8-pyha770c72_0.tar.bz2          6.3 MB
pyopenssl-20.0.1-pyhd3eb1b0_1.conda           49 KB
ncurses-6.3-h9c3ff4c_0.tar.bz2              1012 KB
cffi-1.14.6-py39h400218f_0.conda             225 KB
pyparsing-3.0.7-pyhd8ed1ab_0.tar.bz2          79 KB
jupyter_core-4.9.1-py39hf3d152e_1.tar.bz2      80 KB
cffi-1.15.0-py39h4bc2ebd_0.tar.bz2           227 KB
libstdcxx-ng-9.3.0-hd4cf53a_17.conda         3.1 MB

---------------------------------------------------
Total:                                     255.5 MB

Removed ptyprocess-0.7.0-pyhd3deb0d_0.tar.bz2
Removed pathspec-0.9.0-pyhd8ed1ab_0.tar.bz2
Removed nest-asyncio-1.5.4-pyhd8ed1ab_0.tar.bz2
Removed python-3.9.5-h12debd9_4.tar.bz2
Removed certifi-2021.10.8-py39hf3d152e_1.tar.bz2
Removed tqdm-4.62.3-pyhd8ed1ab_0.tar.bz2
Removed pip-22.0.2-pyhd8ed1ab_0.tar.bz2
Removed backcall-0.2.0-pyh9f0ad1d_0.tar.bz2
Removed openssl-1.1.1k-h27cfd23_0.conda
Removed cython-0.29.27-py39he80948d_0.tar.bz2
Removed zstd-1.5.2-ha95c52a_0.tar.bz2
Removed toml-0.10.2-pyhd8ed1ab_0.tar.bz2
Removed ipython-8.0.1-py39hf3d152e_0.tar.bz2
Removed webencodings-0.5.1-py_1.tar.bz2
Removed ncurses-6.2-he6710b0_1.conda
Removed prompt-toolkit-3.0.26-pyha770c72_0.tar.bz2
Removed pyyaml-6.0-py39h3811e60_3.tar.bz2
Removed urllib3-1.26.8-pyhd8ed1ab_1.tar.bz2
Removed pysocks-1.7.1-py39hf3d152e_4.tar.bz2
Removed urllib3-1.26.6-pyhd3eb1b0_1.conda
Removed requests-2.27.1-pyhd8ed1ab_0.tar.bz2
Removed ca-certificates-2021.7.5-h06a4308_1.conda
Removed libsodium-1.0.18-h36c2ea0_1.tar.bz2
Removed iniconfig-1.1.1-pyh9f0ad1d_0.tar.bz2
Removed tqdm-4.61.2-pyhd3eb1b0_1.conda
Removed scipy-1.7.3-py39hee8e79c_0.tar.bz2
Removed yaml-0.2.5-h7b6447c_0.conda
Removed pyzmq-22.3.0-py39h37b5a0c_1.tar.bz2
Removed certifi-2021.5.30-py39h06a4308_0.conda
Removed chardet-4.0.0-py39hf3d152e_2.tar.bz2
Removed traitlets-5.1.1-pyhd8ed1ab_0.tar.bz2
Removed libblas-3.9.0-13_linux64_openblas.tar.bz2
Removed zipp-3.7.0-pyhd8ed1ab_0.tar.bz2
Removed readline-8.1-h27cfd23_0.conda
Removed ipython_genutils-0.2.0-py_1.tar.bz2
Removed pyopenssl-22.0.0-pyhd8ed1ab_0.tar.bz2
Removed idna-3.3-pyhd8ed1ab_0.tar.bz2
Removed argon2-cffi-21.3.0-pyhd8ed1ab_0.tar.bz2
Removed defusedxml-0.7.1-pyhd8ed1ab_0.tar.bz2
Removed pyrsistent-0.18.1-py39h3811e60_0.tar.bz2
Removed parso-0.8.3-pyhd8ed1ab_0.tar.bz2
Removed pycparser-2.21-pyhd8ed1ab_0.tar.bz2
Removed beautifulsoup4-4.10.0-pyha770c72_0.tar.bz2
Removed importlib_resources-5.4.0-pyhd8ed1ab_0.tar.bz2
Removed f90nml-1.3.1-pyhd8ed1ab_0.tar.bz2
Removed soupsieve-2.3.1-pyhd8ed1ab_0.tar.bz2
Removed tornado-6.1-py39h3811e60_2.tar.bz2
Removed python-libarchive-c-4.0-py39hf3d152e_0.tar.bz2
Removed conda-package-handling-1.7.3-py39h27cfd23_1.conda
Removed conda-package-handling-1.7.3-py39h3811e60_1.tar.bz2
Removed pandas-1.4.0-py39hde0f152_0.tar.bz2
Removed libgcc-ng-11.2.0-h1d223b6_12.tar.bz2
Removed pip-21.1.3-py39h06a4308_0.conda
Removed jedi-0.18.1-py39hf3d152e_0.tar.bz2
Removed pytest-6.2.5-py39hf3d152e_2.tar.bz2
Removed mypy_extensions-0.4.3-py39hf3d152e_4.tar.bz2
Removed yaml-0.2.5-h7f98852_2.tar.bz2
Removed decorator-5.1.1-pyhd8ed1ab_0.tar.bz2
Removed mistune-0.8.4-py39h3811e60_1005.tar.bz2
Removed tzdata-2021a-h52ac0ba_0.conda
Removed jupyterlab_pygments-0.1.2-pyh9f0ad1d_0.tar.bz2
Removed python_abi-3.9-2_cp39.tar.bz2
Removed liblapack-3.9.0-13_linux64_openblas.tar.bz2
Removed pkginfo-1.8.2-pyhd8ed1ab_0.tar.bz2
Removed ruamel_yaml-0.15.80-py39h3811e60_1006.tar.bz2
Removed ld_impl_linux-64-2.35.1-h7274673_9.conda
Removed terminado-0.13.1-py39hf3d152e_0.tar.bz2
Removed jinja2-3.0.3-pyhd8ed1ab_0.tar.bz2
Removed libgcc-ng-9.3.0-h5101ec6_17.conda
Removed icu-69.1-h9c3ff4c_0.tar.bz2
Removed cryptography-36.0.0-py39h9ce1e76_0.conda
Removed pygments-2.11.2-pyhd8ed1ab_0.tar.bz2
Removed conda-4.10.3-py39h06a4308_0.tar.bz2
Removed psutil-5.9.0-py39h3811e60_0.tar.bz2
Removed conda-4.11.0-py39hf3d152e_0.tar.bz2
Removed pytz-2021.3-pyhd8ed1ab_0.tar.bz2
Removed libarchive-3.5.2-hed592e5_1.tar.bz2
Removed lzo-2.10-h516909a_1000.tar.bz2
Removed _libgcc_mutex-0.1-conda_forge.tar.bz2
Removed wcwidth-0.2.5-pyh9f0ad1d_2.tar.bz2
Removed argon2-cffi-bindings-21.2.0-py39h3811e60_1.tar.bz2
Removed debugpy-1.5.1-py39he80948d_0.tar.bz2
Removed conda-build-3.21.7-py39hf3d152e_0.tar.bz2
Removed libgomp-9.3.0-h5101ec6_17.conda
Removed matplotlib-inline-0.1.3-pyhd8ed1ab_0.tar.bz2
Removed nbclient-0.5.10-pyhd8ed1ab_1.tar.bz2
Removed backports-1.0-py_2.tar.bz2
Removed requests-2.25.1-pyhd3eb1b0_0.conda
Removed typing_extensions-4.0.1-pyha770c72_0.tar.bz2
Removed _libgcc_mutex-0.1-main.conda
Removed sqlite-3.36.0-hc218d9a_0.conda
Removed attrs-21.4.0-pyhd8ed1ab_0.tar.bz2
Removed click-8.0.3-py39hf3d152e_1.tar.bz2
Removed nomkl-1.0-h5ca1d4c_0.tar.bz2
Removed prometheus_client-0.13.1-pyhd8ed1ab_0.tar.bz2
Removed ripgrep-13.0.0-habb4d0f_1.tar.bz2
Removed libgfortran-ng-11.2.0-h69a702a_12.tar.bz2
Removed chardet-4.0.0-py39h06a4308_1003.conda
Removed libgfortran5-11.2.0-h5c6108e_12.tar.bz2
Removed ipykernel-6.7.0-py39hef51801_0.tar.bz2
Removed libxml2-2.9.12-h885dcf4_1.tar.bz2
Removed setuptools-60.6.0-py39hf3d152e_0.tar.bz2
Removed entrypoints-0.3-pyhd8ed1ab_1003.tar.bz2
Removed jsonschema-4.4.0-pyhd8ed1ab_0.tar.bz2
Removed patchelf-0.14.3-h58526e2_0.tar.bz2
Removed brotlipy-0.7.0-py39h27cfd23_1003.conda
Removed pycosat-0.6.3-py39h3811e60_1009.tar.bz2
Removed pure_eval-0.2.2-pyhd8ed1ab_0.tar.bz2
Removed typed-ast-1.5.2-py39h3811e60_0.tar.bz2
Removed libgomp-11.2.0-h1d223b6_12.tar.bz2
Removed nbformat-5.1.3-pyhd8ed1ab_0.tar.bz2
Removed packaging-21.3-pyhd8ed1ab_0.tar.bz2
Removed charset-normalizer-2.0.11-pyhd8ed1ab_0.tar.bz2
Removed py-lief-0.11.5-py39he80948d_1.tar.bz2
Removed filelock-3.4.2-pyhd8ed1ab_1.tar.bz2
Removed pandocfilters-1.5.0-pyhd8ed1ab_0.tar.bz2
Removed tk-8.6.10-hbc83047_0.conda
Removed asttokens-2.0.5-pyhd8ed1ab_0.tar.bz2
Removed pluggy-1.0.0-py39hf3d152e_2.tar.bz2
Removed liblief-0.11.5-h9c3ff4c_1.tar.bz2
Removed libstdcxx-ng-11.2.0-he4da1e4_12.tar.bz2
Removed wheel-0.36.2-pyhd3eb1b0_0.conda
Removed importlib-metadata-4.10.1-py39hf3d152e_0.tar.bz2
Removed py-1.11.0-pyh6c4a22f_0.tar.bz2
Removed testpath-0.5.0-pyhd8ed1ab_0.tar.bz2
Removed _openmp_mutex-4.5-1_gnu.tar.bz2
Removed xz-5.2.5-h7b6447c_0.conda
Removed bleach-4.1.0-pyhd8ed1ab_0.tar.bz2
Removed stack_data-0.1.4-pyhd8ed1ab_0.tar.bz2
Removed black-22.1.0-pyhd8ed1ab_0.tar.bz2
Removed setuptools-52.0.0-py39h06a4308_0.conda
Removed zeromq-4.3.4-h9c3ff4c_1.tar.bz2
Removed platformdirs-2.3.0-pyhd8ed1ab_0.tar.bz2
Removed six-1.16.0-pyhd3eb1b0_0.conda
Removed markupsafe-2.0.1-py39h3811e60_1.tar.bz2
Removed cryptography-3.4.7-py39hd23ed53_0.conda
Removed openssl-3.0.0-h7f98852_2.tar.bz2
Removed backports.functools_lru_cache-1.6.4-pyhd8ed1ab_0.tar.bz2
Removed libffi-3.3-he6710b0_2.conda
Removed tzdata-2021e-he74cb21_0.tar.bz2
Removed python-3.9.10-hc74c709_2_cpython.tar.bz2
Removed colorama-0.4.4-pyh9f0ad1d_0.tar.bz2
Removed idna-2.10-pyhd3eb1b0_0.tar.bz2
Removed zlib-1.2.11-h7b6447c_3.conda
Removed libcblas-3.9.0-13_linux64_openblas.tar.bz2
Removed ruamel_yaml-0.15.100-py39h27cfd23_0.conda
Removed pycosat-0.6.3-py39h27cfd23_0.conda
Removed glob2-0.7-py_0.tar.bz2
Removed pycparser-2.20-py_2.conda
Removed pickleshare-0.7.5-py_1003.tar.bz2
Removed send2trash-1.8.0-pyhd8ed1ab_0.tar.bz2
Removed dataclasses-0.8-pyhc8e2a94_3.tar.bz2
Removed pexpect-4.8.0-pyh9f0ad1d_2.tar.bz2
Removed brotlipy-0.7.0-py39h3811e60_1003.tar.bz2
Removed tomli-2.0.0-pyhd8ed1ab_1.tar.bz2
Removed nbconvert-6.4.1-py39hf3d152e_0.tar.bz2
Removed pysocks-1.7.1-py39h06a4308_0.conda
Removed jupyter_client-7.1.2-pyhd8ed1ab_0.tar.bz2
Removed executing-0.8.2-pyhd8ed1ab_0.tar.bz2
Removed pandoc-2.17.1.1-ha770c72_0.tar.bz2
Removed flit-core-3.6.0-pyhd8ed1ab_0.tar.bz2
Removed numpy-1.22.1-py39h91f2184_0.tar.bz2
Removed notebook-6.4.8-pyha770c72_0.tar.bz2
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Removed ncurses-6.3-h9c3ff4c_0.tar.bz2
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Removed libstdcxx-ng-9.3.0-hd4cf53a_17.conda
Cache location: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/pkgs
Will remove the following packages:
/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/pkgs
--------------------------------------------------------------------------

wheel-0.36.2-pyhd3eb1b0_0                    115 KB
openssl-1.1.1k-h27cfd23_0                   13.4 MB
chardet-4.0.0-py39h06a4308_1003              1.5 MB
ca-certificates-2021.7.5-h06a4308_1          209 KB
libstdcxx-ng-9.3.0-hd4cf53a_17              12.6 MB
tzdata-2021a-h52ac0ba_0                      618 KB
six-1.16.0-pyhd3eb1b0_0                       65 KB
zlib-1.2.11-h7b6447c_3                       417 KB
certifi-2021.5.30-py39h06a4308_0             277 KB
libgomp-9.3.0-h5101ec6_17                    1.1 MB
sqlite-3.36.0-hc218d9a_0                     3.4 MB
tk-8.6.10-hbc83047_0                        10.5 MB
conda-4.10.3-py39h06a4308_0                 11.7 MB
xz-5.2.5-h7b6447c_0                          1.5 MB
libblas-3.9.0-13_linux64_openblas             45 KB
ruamel_yaml-0.15.100-py39h27cfd23_0          1.1 MB
readline-8.1-h27cfd23_0                      1.9 MB
pip-21.1.3-py39h06a4308_0                    8.5 MB
python_abi-3.9-2_cp39                         11 KB
libcblas-3.9.0-13_linux64_openblas            45 KB
nomkl-1.0-h5ca1d4c_0                           9 KB
conda-package-handling-1.7.3-py39h27cfd23_1     1.9 MB
libgcc-ng-9.3.0-h5101ec6_17                 24.6 MB
cffi-1.14.6-py39h400218f_0                   846 KB
_libgcc_mutex-0.1-main                         7 KB
idna-2.10-pyhd3eb1b0_0                       280 KB
yaml-0.2.5-h7b6447c_0                        382 KB
pycosat-0.6.3-py39h27cfd23_0                 420 KB
requests-2.25.1-pyhd3eb1b0_0                 214 KB
_libgcc_mutex-0.1-conda_forge                  6 KB
cryptography-3.4.7-py39hd23ed53_0            4.8 MB
brotlipy-0.7.0-py39h27cfd23_1003             817 KB
pyopenssl-20.0.1-pyhd3eb1b0_1                238 KB
ld_impl_linux-64-2.35.1-h7274673_9           2.6 MB
libffi-3.3-he6710b0_2                        199 KB
pysocks-1.7.1-py39h06a4308_0                  97 KB
ncurses-6.2-he6710b0_1                       5.4 MB
pycparser-2.20-py_2                          615 KB
libgfortran-ng-11.2.0-h69a702a_12             86 KB
setuptools-52.0.0-py39h06a4308_0             3.8 MB
liblapack-3.9.0-13_linux64_openblas           45 KB
urllib3-1.26.6-pyhd3eb1b0_1                  471 KB
tqdm-4.61.2-pyhd3eb1b0_1                     362 KB
_openmp_mutex-4.5-1_gnu                       93 KB
python-3.9.5-h12debd9_4                     70.6 MB

---------------------------------------------------
Total:                                     187.8 MB

removing wheel-0.36.2-pyhd3eb1b0_0
removing openssl-1.1.1k-h27cfd23_0
removing chardet-4.0.0-py39h06a4308_1003
removing ca-certificates-2021.7.5-h06a4308_1
removing libstdcxx-ng-9.3.0-hd4cf53a_17
removing tzdata-2021a-h52ac0ba_0
removing six-1.16.0-pyhd3eb1b0_0
removing zlib-1.2.11-h7b6447c_3
removing certifi-2021.5.30-py39h06a4308_0
removing libgomp-9.3.0-h5101ec6_17
removing sqlite-3.36.0-hc218d9a_0
removing tk-8.6.10-hbc83047_0
removing conda-4.10.3-py39h06a4308_0
removing xz-5.2.5-h7b6447c_0
removing libblas-3.9.0-13_linux64_openblas
removing ruamel_yaml-0.15.100-py39h27cfd23_0
removing readline-8.1-h27cfd23_0
removing pip-21.1.3-py39h06a4308_0
removing python_abi-3.9-2_cp39
removing libcblas-3.9.0-13_linux64_openblas
removing nomkl-1.0-h5ca1d4c_0
removing conda-package-handling-1.7.3-py39h27cfd23_1
removing libgcc-ng-9.3.0-h5101ec6_17
removing cffi-1.14.6-py39h400218f_0
removing _libgcc_mutex-0.1-main
removing idna-2.10-pyhd3eb1b0_0
removing yaml-0.2.5-h7b6447c_0
removing pycosat-0.6.3-py39h27cfd23_0
removing requests-2.25.1-pyhd3eb1b0_0
removing _libgcc_mutex-0.1-conda_forge
removing cryptography-3.4.7-py39hd23ed53_0
removing brotlipy-0.7.0-py39h27cfd23_1003
removing pyopenssl-20.0.1-pyhd3eb1b0_1
removing ld_impl_linux-64-2.35.1-h7274673_9
removing libffi-3.3-he6710b0_2
removing pysocks-1.7.1-py39h06a4308_0
removing ncurses-6.2-he6710b0_1
removing pycparser-2.20-py_2
removing libgfortran-ng-11.2.0-h69a702a_12
removing setuptools-52.0.0-py39h06a4308_0
removing liblapack-3.9.0-13_linux64_openblas
removing urllib3-1.26.6-pyhd3eb1b0_1
removing tqdm-4.61.2-pyhd3eb1b0_1
removing _openmp_mutex-4.5-1_gnu
removing python-3.9.5-h12debd9_4
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
-- Miniconda install successful!
-- Found PythonLibs: /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/libpython3.9.so (found version "3.9.10") 
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
-- Checking for Python package numpy -- found
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
-- Checking for Python package scipy -- found
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
-- Checking for Python package matplotlib -- found
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
-- Checking for Python package setuptools -- found
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
-- Checking for Python package tkinter -- found
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
-- Checking for Python package distutils.sysconfig -- found
-- Python relative site-packages location: <prefix>/lib/python3.9/site-packages
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Found FLEX: /software/as/el7.2/EasyBuild/CRG/software/flex/2.6.4/bin/flex (found version "2.6.4") 
-- Found BISON: /software/as/el7.2/EasyBuild/CRG/software/Bison/3.7.6/bin/bison (found version "3.7.6") 
-- Found X11: /software/as/el7.2/EasyBuild/CRG/software/X11/20210518-GCCcore-10.3.0/include   
-- Looking for XOpenDisplay in /software/as/el7.2/EasyBuild/CRG/software/X11/20210518-GCCcore-10.3.0/lib/libX11.so;/software/as/el7.2/EasyBuild/CRG/software/X11/20210518-GCCcore-10.3.0/lib/libXext.so
-- Looking for XOpenDisplay in /software/as/el7.2/EasyBuild/CRG/software/X11/20210518-GCCcore-10.3.0/lib/libX11.so;/software/as/el7.2/EasyBuild/CRG/software/X11/20210518-GCCcore-10.3.0/lib/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found Perl: /usr/bin/perl (found version "5.16.3") 
-- Found perl make: /software/as/el7.2/EasyBuild/CRG/software/make/4.3-GCCcore-10.2.0/bin/make
-- Perl modules well be installed to AMBERHOME/lib/perl
-- Running updater... 
Error processing line 1 of /software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site-packages/distutils-precedence.pth:

  Traceback (most recent call last):
    File "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/miniconda/install/lib/python3.9/site.py", line 169, in addpackage
      exec(line)
    File "<string>", line 1, in <module>
  ModuleNotFoundError: No module named '_distutils_hack'

Remainder of file ignored
/nfs/software/pcosma/el7.2/amber20_src/updateutils/patch.py:313: PatchingWarning: Previously applied patch detected. Skipping.
  warnings.warn('Previously applied patch detected. Skipping.',
-- >>> Preparing to apply updates... please wait. 
-- >>> Downloading updates for AmberTools 21 
-- >>> Downloading AmberTools 21/update.1 (4.51 KB) 
-- >>> Applying AmberTools 21/update.1 
-- >>> Downloading AmberTools 21/update.2 (3.09 KB) 
-- >>> Applying AmberTools 21/update.2 
-- >>> Downloading AmberTools 21/update.3 (2.73 KB) 
-- >>> Applying AmberTools 21/update.3 
-- >>> Downloading AmberTools 21/update.4 (13.13 KB) 
-- >>> Applying AmberTools 21/update.4 
-- >>> Downloading AmberTools 21/update.5 (1.39 KB) 
-- >>> Applying AmberTools 21/update.5 
-- >>> Downloading AmberTools 21/update.6 (48.03 KB) 
-- >>> Applying AmberTools 21/update.6 
-- >>> Downloading AmberTools 21/update.7 (1.34 KB) 
-- >>> Applying AmberTools 21/update.7 
-- >>> Downloading AmberTools 21/update.8 (16.74 KB) 
-- >>> Applying AmberTools 21/update.8 
-- >>> Downloading AmberTools 21/update.9 (59.43 KB) 
-- >>> Applying AmberTools 21/update.9 
-- >>> Downloading AmberTools 21/update.10 (22.70 KB) 
-- >>> Applying AmberTools 21/update.10 
-- >>> Downloading AmberTools 21/update.11 (9.45 KB) 
-- >>> Applying AmberTools 21/update.11 
-- >>> Downloading updates for Amber 20 
-- >>> Downloading Amber 20/update.1 (4.89 KB) 
-- >>> Applying Amber 20/update.1 
-- >>> Downloading Amber 20/update.2 (3.43 KB) 
-- >>> Applying Amber 20/update.2 
-- >>> Downloading Amber 20/update.3 (1.83 KB) 
-- >>> Applying Amber 20/update.3 
-- >>> Downloading Amber 20/update.4 (32.28 KB) 
-- >>> Applying Amber 20/update.4 
-- >>> Downloading Amber 20/update.5 (22.48 KB) 
-- >>> Applying Amber 20/update.5 
-- >>> Downloading Amber 20/update.6 (2.38 KB) 
-- >>> Applying Amber 20/update.6 
-- >>> Downloading Amber 20/update.7 (1.60 KB) 
-- >>> Applying Amber 20/update.7 
-- >>> Downloading Amber 20/update.8 (4.49 KB) 
-- >>> Applying Amber 20/update.8 
-- >>> Downloading Amber 20/update.9 (17.90 KB) 
-- >>> Applying Amber 20/update.9 
-- >>> Downloading Amber 20/update.10 (19.80 KB) 
-- >>> Applying Amber 20/update.10 
-- >>> Downloading Amber 20/update.11 (1.11 KB) 
-- >>> Applying Amber 20/update.11 
-- >>> Downloading Amber 20/update.12 (179.27 KB) 
-- >>> Downloading: [                                                  ]   0.0%Downloading: [:                                                 ]   2.2%Downloading: [::                                                ]   4.5%Downloading: [:::                                               ]   6.7%Downloading: [::::                                              ]   8.9%Downloading: [:::::                                             ]  11.2%Downloading: [::::::                                            ]  13.4%Downloading: [:::::::                                           ]  15.6%Downloading: [::::::::                                          ]  17.8%Downloading: [::::::::::                                        ]  20.1%Downloading: [:::::::::::                                       ]  22.3%Downloading: [::::::::::::                                      ]  24.5%Downloading: [:::::::::::::                                     ]  26.8%Downloading: [::::::::::::::                                    ]  29.0%Downloading: [:::::::::::::::                                   ]  31.2%Downloading: [::::::::::::::::                                  ]  33.5%Downloading: [:::::::::::::::::                                 ]  35.7%Downloading: [::::::::::::::::::                                ]  37.9%Downloading: [::::::::::::::::::::                              ]  40.2%Downloading: [:::::::::::::::::::::                             ]  42.4%Downloading: [::::::::::::::::::::::                            ]  44.6%Downloading: [:::::::::::::::::::::::                           ]  46.9%Downloading: [::::::::::::::::::::::::                          ]  49.1%Downloading: [:::::::::::::::::::::::::                         ]  51.3%Downloading: [::::::::::::::::::::::::::                        ]  53.5%Downloading: [:::::::::::::::::::::::::::                       ]  55.8%Downloading: [:::::::::::::::::::::::::::::                     ]  58.0%Downloading: [::::::::::::::::::::::::::::::                    ]  60.2%Downloading: [:::::::::::::::::::::::::::::::                   ]  62.5%Downloading: [::::::::::::::::::::::::::::::::                  ]  64.7%Downloading: [:::::::::::::::::::::::::::::::::                 ]  66.9%Downloading: [::::::::::::::::::::::::::::::::::                ]  69.2%Downloading: [:::::::::::::::::::::::::::::::::::               ]  71.4%Downloading: [::::::::::::::::::::::::::::::::::::              ]  73.6%Downloading: [:::::::::::::::::::::::::::::::::::::             ]  75.9%Downloading: [:::::::::::::::::::::::::::::::::::::::           ]  78.1%Downloading: [::::::::::::::::::::::::::::::::::::::::          ]  80.3%Downloading: [:::::::::::::::::::::::::::::::::::::::::         ]  82.6%Downloading: [::::::::::::::::::::::::::::::::::::::::::        ]  84.8%Downloading: [:::::::::::::::::::::::::::::::::::::::::::       ]  87.0%Downloading: [::::::::::::::::::::::::::::::::::::::::::::      ]  89.2%Downloading: [:::::::::::::::::::::::::::::::::::::::::::::     ]  91.5%Downloading: [::::::::::::::::::::::::::::::::::::::::::::::    ]  93.7%Downloading: [:::::::::::::::::::::::::::::::::::::::::::::::   ]  95.9%Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::: ]  98.2%Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::] 100.0% Done. 
-- >>> Applying Amber 20/update.12 
-- >>> NOTE: update_amber only updates the raw source code! You must recompile if you want  
-- >>>       any changes to take effect! 
-- Updater done.  If you want to install updates, then set the APPLY_UPDATES variable to true. 
-- Checking whether to use built-in libraries...
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Looking for complex.h
-- Looking for complex.h - found
-- Looking for rl_initialize in libreadline.so
-- Looking for rl_initialize in libreadline.so - not found
-- Detailed information about why this check failed can be found in /software/pcosma/el7.2/amber20_src/build/CMakeFiles/CMakeError.log
-- Could NOT find Readline (missing: READLINE_WORKS) 
CMake Error at cmake/3rdPartyTools.cmake:84 (message):
  3rd party program readline is not bundled and cannot be built inside Amber.
Call Stack (most recent call first):
  cmake/3rdPartyTools.cmake:189 (set_3rdparty)
  CMakeLists.txt:190 (include)


-- Configuring incomplete, errors occurred!
See also "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/CMakeOutput.log".
See also "/software/pcosma/el7.2/amber20_src/build/CMakeFiles/CMakeError.log".