Re: [AMBER] Could not import Amber Python modules! Centos 7

From: Suguna Sakkiah <ssakkiah.c4therapeutics.com>
Date: Mon, 7 Feb 2022 17:09:24 +0000

Hi David,

Thanks for your suggestions. Successfully passed all files for test.cuda.serial.

Regards
Suguna

From: David A Case <david.case.rutgers.edu>
Sent: Sunday, February 6, 2022 12:02 PM
To: AMBER Mailing List <amber.ambermd.org>
Subject: Re: [AMBER] Could not import Amber Python modules! Centos 7

Email from external sender: david.case.rutgers.edu<mailto:david.case.rutgers.edu>

On Sun, Feb 06, 2022, Suguna Sakkiah wrote:

>Step 5: change to the $AMBERHOME/test and run ./test_amber_cuda_serial.sh

This is going "underneath the hood", in ways we haven't tested. Try the
following, which is in item 5 in Section 2.1:

cd $AMBERHOME
make test.cuda.serial

This *may* lead to a different result, or may not.

The "cannot import python modules" error is coming from a script that is
trying to import parmed; but your test indiates that you are not having any
problems with this from the command line. So I'm puzzled.

I'm hoping someone else on the list will recognize the problem. I've asked
one of our troubleshooters to look at this as well.

....dac


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Received on Mon Feb 07 2022 - 09:30:02 PST
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