Re: [AMBER] Could not import Amber Python modules! Centos 7

From: Suguna Sakkiah <ssakkiah.c4therapeutics.com>
Date: Sat, 5 Feb 2022 14:21:22 +0000

Hi David,

Below the output of the command: $AMBERHOME/bin/parmed

. . . . . . . . . + .
  . . : . .. :. .___---------___.
       . . . . :.:. _".^ .^ ^. '.. :"-_. .
    . : . . .:../: . .^ :.:\.
        . . :: +. :.:/: . . . . . .:\
. : . . _ :::/: . ^ . . .:\
  .. . . . - : :.:./. . .:\
  . . . :..|: . . ^. .:|
    . . : : ..|| . . . !:|
  . . . . ::. ::\( . :)/
. . : . : .:.|. ###### .#######::|
  :.. . :- : .: ::|.####### ..########:|
. . . .. . .. :\ ######## :######## :/
  . .+ :: : -.:\ ######## . ########.:/
    . .+ . . . . :.:\. ####### #######..:/
      :: . . . . ::.:..:.\ . . ..:/
   . . . .. : -::::.\. | | . .:/
      . : . . .-:.":.::.\ ..:/ .~~~~~~~~~~~.
. -. . . . .: .:::.:.\. .:/,: Prepare to \
. . . : : ....::_:..:\ ___. :/ . be |
   . . . .:. .. . .: :.:.:\ :/ \ P A R M E D |
     + . . : . ::. :.:. .:.|\ .:/| \~~~~~~~~~~~'
     . + . . ...:: ..| --.:|
. . . . . . . ... :..:.."( ..)"
. . . : . .: ::/ . .::\

ParmEd: a Parameter file Editor


Reading input from STDIN...
>

Regards
Suguna


From: David A Case <david.case.rutgers.edu>
Sent: Saturday, February 5, 2022 8:10 AM
To: AMBER Mailing List <amber.ambermd.org>
Cc: Scott Brozell <sbrozell.comcast.net>
Subject: Re: [AMBER] Could not import Amber Python modules! Centos 7

Email from external sender: david.case.rutgers.edu<mailto:david.case.rutgers.edu>

On Fri, Feb 04, 2022, Suguna Sakkiah wrote:
>Hi,
>
>Thanks for the suggestions. The $PYHTONPATH shows: /data/Amber/amber20/lib/python3.9/site-packages
>
>As per your suggestion I changed the directory to $AMBERHOME/lib/python3.9/site-packages, and command "ls -l". Below the output
>

I don't see any problems. What happens if you type "$AMBERHOME/bin/parmed"
on the command-line?

...thx...dac

Scott: the error comes from test_check.sh. Could you look at this?

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