Dear Sir
I am actually waiting for your response, due to some reason email goes to
junk mail,
Yes you are right I actually want to eliminate hydrogen bond of some
guanine atoms (not all) so that those atoms not interact with protein.
Kindly guide how can I do this. Thanks
Kind Regards
Rehan
On Sat, 14 Aug 2021, 7:41 am David A Case, <dacase.chem.rutgers.edu> wrote:
> On Fri, Aug 13, 2021, Rana Rehan Khalid wrote:
>
> >
> >I have a nucleotide lets consider guanine and I want to cap the
> basepairing
> >(G-C) atoms of guanine. And want to study the affect of other 2 atoms on
> >the protein surface. How can I do this. I actually want, not to allow
> >basepairing atoms to interact with surface residue.
>
> You'll probably have to think more carefully about what you want to
> accomplish. What (exactly) do you mean when you say that certain atoms
> don't "interact" with other atoms or residues? Are you trying to eliminate
> hydrogen bonds between the guanine and the protein? Or something else?
>
> ....dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sat Aug 28 2021 - 12:30:03 PDT