[AMBER] Error message

From: Vento, Gabby <Christopher.Vento.rockets.utoledo.edu>
Date: Wed, 28 Jul 2021 21:30:59 +0000


I am attempting to run some simulations. However, the simulation will not complete due to the error message I keep receiving. Could someone please tell me what this error message means and how I can fix it?

  File "/N/soft/rhel7/amber/gpu/intel/18/amber18/bin/MMPBSA.py", line 100, in <module>
  File "/N/soft/rhel7/amber/gpu/intel/18/amber18/lib/python3.6/site-packages/MMPBSA_mods/main.py", line 218, in run_mmpbsa
    self.calc_list.run(rank, self.stdout)
  File "/N/soft/rhel7/amber/gpu/intel/18/amber18/lib/python3.6/site-packages/MMPBSA_mods/calculation.py", line 82, in run
    calc.run(rank, stdout=stdout, stderr=stderr)
  File "/N/soft/rhel7/amber/gpu/intel/18/amber18/lib/python3.6/site-packages/MMPBSA_mods/calculation.py", line 430, in run
    error_list = [s.strip() for s in out.split('\n')
TypeError: a bytes-like object is required, not 'str'
Exiting. All files have been retained.

-Gabby Vento, M.S.
(she / her / hers)
College of Medicine and Life Sciences
Doctoral Student: Biomedical Sciences - Bioinformatics

AMBER mailing list
Received on Wed Jul 28 2021 - 15:00:02 PDT
Custom Search