Re: [AMBER] To build a single covalent bond between a protein and a ligand.

From: Song, Lin <songlin3.chemistry.msu.edu>
Date: Thu, 8 Jul 2021 17:19:26 +0000

Hi,

FYI, here’s an example of building covalent bond, though it’s between metal ion and ligand. You can adapt from there: http://ambermd.org/tutorials/advanced/tutorial20/files/mcpbpy/1OKL_tleap.in

Best,
Lin

> On Jul 8, 2021, at 2:14 AM, PRIYANKA PUROHIT <p.purohit.bioinfo.gmail.com> wrote:
>
> Dear sir,
> I am Priyanka Purohit, a Research Scholar, Berhampur University, Odisha,
> India. I want to build a single covalent bond between a protein and a
> ligand using AMBER18. I want to know the exact tleap command to build the
> single bond. So, need ur kind suggestions.
> Thanking in advance,Waiting for ur kind reply.
> Regards,
> Priyanka Purohit,
> Research Scholar,
> Berhampur university,
> Odisha, India.
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Received on Thu Jul 08 2021 - 10:30:02 PDT
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