[AMBER] Conversion of CHARMM optimized pdb to AMBER compatible pdb

From: Cato, Lee <michael.lee.cato.emory.edu>
Date: Fri, 26 Mar 2021 16:34:32 +0000


I am trying to run some simulations with a glycoprotein model originally optimized for CHARMM. Unfortunately, do the differences in glycan nomenclature specifically, I am unable to generate the file for simulation in amber with the current pdb. The protein is quite large, so I would rather not have to manually convert all glycan to amber formatting.

Is it possible to use CHARM or another software to make a simple conversion to an amber compatible pdb?



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Received on Fri Mar 26 2021 - 10:00:02 PDT
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