Dear Users,
I am using the following input parameters for tleap input. Before it I have
run pdb4amber also.
Tleap input:
source leaprc.protein.ff14SB
source leaprc.RNA.OL3
source leaprc.water.tip3p
designed = loadPdb 6mdz-R.amber.pdb
check designed
addions designed Na+ 8
solvatebox designed TIP3PBOX 10.00 0.75
charge designed
saveAmberParm designed 6mdz-R.amber.prm.top 6mdz-R.amber.prm.crd
savepdb designed 6mdz-R.amber.out.pdb
quit
After running, Tleap I am getting this error message again and again:
FATAL: Atom .R<U5 805>.A<OP3 29> does not have a type.
FATAL: Atom .R<U5 805>.A<P 30> does not have a type.
FATAL: Atom .R<U5 805>.A<OP1 31> does not have a type.
FATAL: Atom .R<U5 805>.A<OP2 32> does not have a type.
FATAL: Atom .R<A5 825>.A<P 32> does not have a type.
FATAL: Atom .R<A5 825>.A<OP1 33> does not have a type.
FATAL: Atom .R<A5 825>.A<OP2 34> does not have a type.
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Received on Fri Mar 12 2021 - 03:30:02 PST
