I am facing an exactly same issue. I have this error for parmed, MMPBSA.py
and pdb4amber.
When I type pdb4amber -h, I am getting this message:
Traceback (most recent call last):
File "/opt/amber18/bin/pdb4amber", line 33, in <module>
sys.exit(load_entry_point('pdb4amber==1.7.dev0', 'console_scripts',
'pdb4amber')())
File "/opt/amber18/bin/pdb4amber", line 22, in importlib_load_entry_point
for entry_point in distribution(dist_name).entry_points
File
"/opt/amber18/miniconda/lib/python3.7/site-packages/importlib_metadata/__init__.py",
line 558, in distribution
return Distribution.from_name(distribution_name)
File
"/opt/amber18/miniconda/lib/python3.7/site-packages/importlib_metadata/__init__.py",
line 215, in from_name
raise PackageNotFoundError(name)
importlib_metadata.PackageNotFoundError: No package metadata was found for
pdb4amber
And for pamed -h
File "/opt/amber18/bin/parmed", line 33, in <module>
sys.exit(load_entry_point('ParmEd==3.2.0', 'console_scripts',
'parmed')())
File "/opt/amber18/bin/parmed", line 22, in importlib_load_entry_point
for entry_point in distribution(dist_name).entry_points
File
"/opt/amber18/miniconda/lib/python3.7/site-packages/importlib_metadata/__init__.py",
line 558, in distribution
return Distribution.from_name(distribution_name)
File
"/opt/amber18/miniconda/lib/python3.7/site-packages/importlib_metadata/__init__.py",
line 215, in from_name
raise PackageNotFoundError(name)
importlib_metadata.PackageNotFoundError: No package metadata was found for
ParmEd
Kindly help.
Regards,
Sruthi Sudhakar
On Wed, Mar 3, 2021 at 7:01 PM David A Case <david.case.rutgers.edu> wrote:
> On Wed, Mar 03, 2021, Jenny 148 wrote:
>
> >ModuleNotFoundError: No module named 'parmed'
> >I did source /apps/amber18/amber.sh
>
> Just to check:
>
> what is the result of "echo $PYTHONPATH" ?
> do you have a parmed file in /apps/amber18/bin ?
> if you type "/apps/amber18/bin/pdb4amber" do you get a usage statement?
>
> ...dac
>
>
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Received on Wed Mar 03 2021 - 07:00:02 PST
