On Tue, Dec 29, 2020, Holly Freedman wrote:
>
>I am trying to model cytidine monophosphate base-paired with
>guanosine monophosphate (i.e. a single RNA base-pair), and I could use some
>advice on how best to do this please.
Please see Section 3.2.3 in the Amber 2020 Reference Manual. You will
want a construct like this:
cnuc = sequence { OHE C3 }
Assumes that by "cytidine monophosphate" you mean the usual nucleotide unit.
...good luck....dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Dec 29 2020 - 18:30:02 PST