From: David A Case <>
Date: Tue, 29 Dec 2020 21:26:54 -0500

On Tue, Dec 29, 2020, Holly Freedman wrote:
>I am trying to model cytidine monophosphate base-paired with
>guanosine monophosphate (i.e. a single RNA base-pair), and I could use some
>advice on how best to do this please.

Please see Section 3.2.3 in the Amber 2020 Reference Manual. You will
want a construct like this:

    cnuc = sequence { OHE C3 }

Assumes that by "cytidine monophosphate" you mean the usual nucleotide unit.

...good luck....dac

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Received on Tue Dec 29 2020 - 18:30:02 PST
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