Re: [AMBER] How to graph CPPTRAJ in (ns) instead of timesteps

From: Maria Nagan <maria.c.nagan.gmail.com>
Date: Tue, 22 Dec 2020 14:09:04 -0500

Hi-

You can divide the steps by the conversion factor needed to get nanoseconds. For instance if you have ps and you want ns.

I usually make a batch file (bfile) like this:

#Converting ps to ns
s0.x= s0.x/1000

xmgrace -batch bfile

Maria

> On Dec 22, 2020, at 1:51 PM, Maghsoud, Yazdan <YazdanMaghsoud.my.unt.edu> wrote:
>
> Dear Amber users,
>
> I want to plot the CPPTRAJ of .mdcrd outputs by Xmgrace to investigate the changing of bond distance vs. time, but it gives me the X-axis in steps instead of time(ns). What should I do to change it?
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Dec 22 2020 - 11:30:02 PST
Custom Search