ambpdb did work and I got a pdb file from the restart file of minimization.
I just want to know the usual practice after minimizing some newly modelled
structures.
On Wed, 16 Dec 2020 at 12:56, Bill Ross <ross.cgl.ucsf.edu> wrote:
> I bet you could try it and report back faster than I could look it up,
> fwiw. :-)
>
> Bill
>
>
> On 12/15/20 11:23 PM, Jisha B wrote:
> > I have modelled a protein in a few places and so minimized the structure
> in
> > AMBER before using it to form a complex with a ligand. So after a
> > minimization of 10000 steps in AMBER18, I need the pdb file of the
> protein.
> > So is it enough to use the ambpdb or is there any other method for the
> same?
> >
> --
> Phobrain.com
>
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>
--
Jisha B.
G-Tech Computer Education,
Kerala,
India.
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Received on Tue Dec 15 2020 - 23:30:03 PST
