[AMBER] Stacking distance in CPPTRAJ

From: Athena N <athena.nas01.gmail.com>
Date: Sun, 13 Dec 2020 16:48:28 +0530

Hi,

I would like to know how could we calculate the stacking distance of a
ligand ring to the amino acid/ nucleic acid ring over the trajectory in
cpptraj. The “distance” options gives the value between the atoms. But if
we have to calculate it using a group, how to do that?
Thanks in advance for your help.


Regards,
Athena
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Received on Sun Dec 13 2020 - 03:30:02 PST
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