Hi,
On Thu, Oct 22, 2020 at 11:47:41AM -0700, Wesley Michael Botello-Smith wrote:
> I am attempting to install AMBER with GPU support on a new computing
> cluster. Unfortunately, when it attempts to install pbsa, I get the
> following error (apparently our gcc compiler is too... new?):
...
> > /cm/shared/apps/cuda10.2/toolkit/10.2.89/bin/../targets/x86_64-linux/include/crt/host_config.h:138:2:
> > error: #error -- unsupported GNU version! gcc versions later than 8 are not
> > supported!
> > 138 | #error -- unsupported GNU version! gcc versions later than 8 are
> > not supported!
> > | ^~~~~
> > make[2]: *** [cuda_mg_wrapper.o] Error 1
> > make[2]: Leaving directory `/home/wesley/amber18/AmberTools/src/pbsa'
> > make[1]: *** [cuda_serial] Error 2
> > make[1]: Leaving directory `/home/wesley/amber18/AmberTools/src'
> > make: *** [install] Error 2
>
>
> This is on a new rack server from Bright Computing. Although it comes with
> amber20 installed, we are attempting to trouble shoot some errors we saw
> trying to run a system between amber18 and amber20 elsewhere.
>
...
> Below is relevant information about our hardware, compilers, etc.
>
> > $ uname -a
> > Linux bright90 3.10.0-1127.10.1.el7.x86_64 #1 SMP Wed Jun 3 14:28:03 UTC
> > 2020 x86_64 x86_64 x86_64 GNU/Linux
>
That is a RHEL 7.8 or CentOS 7.8 kernel, which come with
gcc-4.8.5-39.el7.x86_64 not gcc 9.2.0. Do you have any specific
module loaded which would override the /usr/bin/gcc from the PATH?
cheers,
Tru
--
Tru Huynh (PhD) | mailto:tru.pasteur.fr | tel +33 1 45 68 87 37
https://research.pasteur.fr/en/team/structural-bioinformatics/
Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
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Received on Thu Oct 22 2020 - 14:30:02 PDT
