This was a really annoying problem that limited the analysis I could do
during the sudden-lockdown phase and even now when one is forced by the
conditions to work from home.
I'm not an expert user thus asking if people consider Chimera or other
tools to have equivalent/additional capabilities e.g. clustering with all
options available in AmberTools? Else one gets limited by what the windows
versions allow.
Nonetheless, I appreciate all these tools that make
simulations/learning/teaching possible and easier.
thank you.
On Fri, Oct 16, 2020 at 11:02 AM Elvis Martis <elvis_bcp.elvismartis.in>
wrote:
> Hi
> If you are using VMD on windows, then it cannot load NetCDF trajectories at
> the moment is what I have observed.
> Best Regards
> Elvis
>
>
>
> On Fri, 16 Oct 2020 at 09:55, Wu Xu <wu.xu.louisiana.edu> wrote:
>
> > Dear Amber users
> >
> > I used AMBER16 sander.MPI (-x filename.mdcrd) to create .mdcrd. However,
> > VMD 1.9.4 could not read it. So no frames were added into .prmtop loaded
> > first.
> >
> > I do not see the option "netCDF" format from VMD.
> >
> > Do you know how to solve this problem? Thanks,
> >
> > Wu
> >
> >
> > Dr. Wu Xu
> >
> > Professor of Biochemistry
> >
> > Department of Chemistry
> >
> > Room No. 138, Montgomery Hall
> >
> > 300 E. St. Mary BLVD
> >
> > P.O. Box 43700
> >
> > University of Louisiana at Lafayette
> >
> > Lafayette, LA 70504
> >
> > Telephone: 337-482-5684 (office)
> >
> > 337-482-6739 (lab)
> >
> > Fax: 337-482-5676
> >
> > Email: wxx6941.louisiana.edu<mailto:wxx6941.louisiana.edu>
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
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>
--
Regards,
Dr. Vaibhav A. Dixit,
Visiting Scientist at the Manchester Institute of Biotechnology (MIB), The
University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
AND
Assistant Professor,
Department of Pharmacy,
▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄
Birla Institute of Technology and Sciences Pilani (BITS-Pilani),
VidyaVihar Campus, street number 41, Pilani, Rajasthan 333031.
India.
Phone No. +91 1596 255652, Mob. No. +91-7709129400,
Email: vaibhav.dixit.pilani.bits-pilani.ac.in, vaibhavadixit.gmail.com
http://www.bits-pilani.ac.in/pilani/vaibhavdixit/profile
https://www.linkedin.com/in/vaibhav-dixit-b1a07a39/
ORCID ID: https://orcid.org/0000-0003-4015-2941
http://scholar.google.co.in/citations?user=X876BKcAAAAJ&hl=en&oi=sra
P Please consider the environment before printing this e-mail
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Received on Thu Oct 15 2020 - 23:00:02 PDT
