Re: [AMBER] Compiling CPPTRAJ from GitHub

From: Gustaf Olsson <gustaf.olsson.lnu.se>
Date: Tue, 6 Oct 2020 09:00:32 +0000

It is possible that there is something strange with my Xcode though as I keep it updated and have installed all additional components, I would be surprised. Potentially it can be a version difference (11.3.1 (11C504).

The difference between GNU ang CLANG might not be so strange, it likely the case that I included the -mpi and -openmpi with gnu while missing the -mpi flag with CLANG as openmpi is not supported by clang. Sorry for mixing up inputs and outputs.

Best regards
// Gustaf

> On 5 Oct 2020, at 15:58, David A Case <david.case.rutgers.edu> wrote:
>
> On Mon, Oct 05, 2020, Gustaf Olsson wrote:
>>
>> GNU
>> Error: Run of test program failed, compiled with: mpicxx -Wall -O3 -std=gnu++11 -I/amber20//include -o testp testp.cpp /amber20//lib/libsander.dylib
>>
>> CLANG
>> Error: Run of test program failed, compiled with: clang++ -Wall -O3 -std=c++11 -I/amber20/include -o testp testp.cpp /amber20/lib/libsander.dylib
>>
>
> It's odd that the GNU error is with mpicxx, whereas the CLANG error is
> with clang++. Don't know what to make of this, however.
>
>> ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1"
>> ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/local/include"
>> ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/Library/Frameworks"
>>
>
> I have the second two folders (but with a different path for Frameworks)
> on MacOS 10.15. I'm wondering if there is some incompatibility with
> Xcode and your OS, or somehow you have a broken Xcode installation.
>
> We'll have to see if others report a problem like this. (Have you tried
> on more than one machine? Apologies if I've asked that before.)
>
> ....dac
>
>
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Received on Tue Oct 06 2020 - 02:30:02 PDT
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