Thanks for your help David,
Actually I uninstalled plumed to try to get the package compiled,
now the make install is throwing an error linking CXX
[ 67%] Linking CXX executable cpptraj.cuda
/home/drewaight/anaconda3/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib/librt.so:
undefined reference to `__vdso_clock_gettime.GLIBC_PRIVATE'
is it a good idea to use the same flag as you mentioned above on this
library also? Thanks again for your help.
Drew
On Wed, May 27, 2020 at 5:25 AM David A Case <david.case.rutgers.edu> wrote:
> On Tue, May 26, 2020, Andrew Waight wrote:
>
> >Hello I am trying to install AmberTools on Ubuntu 18.04 MPI and CUDA
> >enabled with cmake 3.17.2 the "make install" errors out with.
> >
> >CMakeFiles/libsanderles.dir/Plumed.c.o:(.data.rel+0x0): undefined
> reference
> >to `plumedmain_create'
> >CMakeFiles/libsanderles.dir/Plumed.c.o:(.data.rel+0x8): undefined
> reference
> >to `plumedmain_cmd'
> >CMakeFiles/libsanderles.dir/Plumed.c.o:(.data.rel+0x10): undefined
> >reference to `plumedmain_finalize'
> >
> >I have PLUMED already installed for use with GROMACS and I dont really
> want
> >to uninstall it. Does anyone have any advice for me to complete the
> >installation? Thanks so much for any help!
>
> Set -DFORCE_DISABLED_LIBS=plumed in your run_cmake script, and see if
> that helps. In spite of what it looks like, runtime linking to plumed
> may still work (?!?) Viktor Drobot is working on this issue, and I'm
> hoping we can get an update out soon.
>
> ...dac
>
>
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Received on Wed May 27 2020 - 07:30:02 PDT
