-I: Adding /home/ab/amber16/dat/leap/prep to search path.
-I: Adding /home/ab/amber16/dat/leap/lib to search path.
-I: Adding /home/ab/amber16/dat/leap/parm to search path.
-I: Adding /home/ab/amber16/dat/leap/cmd to search path.
-f: Source leap.in.

Welcome to LEaP!
(no leaprc in search path)
Sourcing: ./leap.in
----- Source: /home/ab/amber16/dat/leap/cmd/leaprc.gaff
----- Source of /home/ab/amber16/dat/leap/cmd/leaprc.gaff done
Log file: ./leap.log
Loading parameters: /home/ab/amber16/dat/leap/parm/gaff.dat
Reading title:
AMBER General Force Field for organic molecules (Version 1.8, Mar 2015)
----- Source: /home/ab/amber16/dat/leap/cmd/leaprc.ff99SBnmr
----- Source of /home/ab/amber16/dat/leap/cmd/leaprc.ff99SBnmr done
Log file: ./leap.log
Loading parameters: /home/ab/amber16/dat/leap/parm/parm99.dat
Reading title:
PARM99 for DNA,RNA,AA, organic molecules, TIP3P wat. Polariz.& LP incl.02/04/99
Loading parameters: /home/ab/amber16/dat/leap/parm/frcmod.ff99SBnmr
Reading force field modification type file (frcmod)
Reading title:
From D.W. Li and R. Bruschweiler, Angew. Chem. Int. Eng. Ed. 49:6778, 2010
Loading library: /home/ab/amber16/dat/leap/lib/all_nucleic94.lib
Loading library: /home/ab/amber16/dat/leap/lib/all_amino94.lib
Loading library: /home/ab/amber16/dat/leap/lib/all_aminoct94.lib
Loading library: /home/ab/amber16/dat/leap/lib/all_aminont94.lib
Loading library: /home/ab/amber16/dat/leap/lib/ions94.lib
Loading library: /home/ab/amber16/dat/leap/lib/solvents.lib
Loading Prep file: ./prep/testsirius4.prepin
Loading parameters: ./prep/testsirius4.frcmod
Reading force field modification type file (frcmod)
Reading title:
remark goes here
Checking Unit.
WARNING: The unperturbed charge of the unit: 4.004001 is not zero.

 -- ignoring the warning.

Building topology.
Building atom parameters.
Building bond parameters.
Building angle parameters.
Building proper torsion parameters.
Building improper torsion parameters.
old PREP-specified impropers:
 <UNK 1>:  C42  C43  C41  H23 
 <UNK 1>:  C41  C40  C42  H25 
 <UNK 1>:  C6   N12  C7   O1  
 <UNK 1>:  C32  C7   N12  H33 
 <UNK 1>:  C32  N14  C33  O9  
 <UNK 1>:  C33  C36  N14  H37 
 <UNK 1>:  C38  C37  C36  N14 
 <UNK 1>:  C39  C36  C38  H38 
 <UNK 1>:  C36  N2   C37  O11 
 <UNK 1>:  C14  C37  N2   HN2 
 <UNK 1>:  C14  N1   C15  O3  
 <UNK 1>:  C8   C15  N1   HN1 
 <UNK 1>:  C8   N4   C9   O2  
 <UNK 1>:  C18  C9   N4   HN4 
 <UNK 1>:  N7   N5   C23  N6  
 <UNK 1>:  C18  N8   C19  O4  
 <UNK 1>:  C19  C24  N8   HN8 
 <UNK 1>:  C24  N10  C25  O5  
 <UNK 1>:  C25  C28  N10  H29 
 <UNK 1>:  C28  N13  C29  O7  
 <UNK 1>:  C29  C35  N13  H36 
 total 21 improper torsions applied
 21 improper torsions in old prep form
Building H-Bond parameters.
Incorporating Non-Bonded adjustments.
Not Marking per-residue atom chain types.
Marking per-residue atom chain types.
 (no restraints)
	Quit
