[AMBER] Force field for terminal phosphorylated residues

From: Ming Tang <m21.tang.qut.edu.au>
Date: Tue, 18 Feb 2020 07:11:57 +0000

Dear list,

I found that amber does not treat phosphorylated residues (e.g., pThr) differently when they locate in the protein terminal. This results in the situation that terminal phosphothreonine (TPO) has a charge of negative 3. Is this reliable?

Any help and suggestions are appreciated,

Thanks,
Ming

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Received on Mon Feb 17 2020 - 23:30:02 PST