It seem that I do not have the mpi library, because: configure: error: could not find mpi library for --enable-mpi
I did the following that you recommend and receive this output:
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether gcc and cc understand -c and -o together... yes
checking for C compiler vendor... gnu
checking for gcc option to accept ISO C99... none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for ocamlbuild... no
checking for mpicc... no
checking for hcc... no
checking for mpcc... no
checking for mpcc_r... no
checking for mpxlc... no
checking for cmpicc... no
checking for MPI_Init... no
checking for MPI_Init in -lmpi... no
checking for MPI_Init in -lmpich... no
configure: error: could not find mpi library for --enable-mpi
-----Original Message-----
From: Gerardo Zerbetto De Palma <g.zerbetto.gmail.com>
Sent: Monday, February 17, 2020 8:49 PM
To: AMBER Mailing List <amber.ambermd.org>
Subject: Re: [AMBER] installing
This message is from an external sender. Please take care when responding, clicking links or opening attachments.
Edit
Do the following:
cat /home/nico/amber18/AmberTools/src/fftw3_config.log
El lun., 17 de feb. de 2020 17:48, Gerardo Zerbetto De Palma < g.zerbetto.gmail.com> escribió:
> Hi again!
> Just to make it clear: Are those the contents of fftw3_config.log file?
> In case not, just do the following:
>
> cat /home/nico/amber18/AmberTools/src
>
> and paste contents here.
> Regards
> Gera!
>
> El lun., 17 de feb. de 2020 17:41, Nicolas Feldman
> <nfeldman01.qub.ac.uk>
> escribió:
>
>> Everything seems okey until this last few lines where a error is
>> display
>>
>> Checking for zlib: OK
>>
>>
>> Checking for libbz2: OK
>>
>>
>> Configuring fftw-3.3 (may be time-consuming)...
>>
>>
>> Error: FFTW configure returned 1
>>
>> FFTW configure failed! Check the fftw3_config.log file
>>
>> in the /home/nico/amber18/AmberTools/src directory.
>>
>> Configure failed due to the errors above!
>>
>> Nicolas Feldman
>> PhD Student
>> The Wellcome-Wolfson Institute for Experimental Medicine Queen's
>> University of Belfast; 97 Lisburn Rd. Belfast, UK BT9 7BL
>>
>> -----Original Message-----
>> From: Gerardo Zerbetto De Palma <g.zerbetto.gmail.com>
>> Sent: Monday, February 17, 2020 8:39 PM
>> To: AMBER Mailing List <amber.ambermd.org>
>> Subject: Re: [AMBER] installing
>>
>> This message is from an external sender. Please take care when
>> responding, clicking links or opening attachments.
>>
>> Share that error log with us!
>> Regards
>> Gera!
>>
>> El lun., 17 de feb. de 2020 17:36, Nicolas Feldman
>> <nfeldman01.qub.ac.uk>
>> escribió:
>>
>> > I'm getting this error when installing:
>> > Error: FFTW configure returned 1
>> > FFTW configure failed! Check the fftw3_config.log file in the
>> > /home/[user]/amber18/AmberTools/src directory.
>> > Configure failed due to the errors above!
>> >
>> > Nicolas Feldman
>> > PhD Student
>> > The Wellcome-Wolfson Institute for Experimental Medicine Queen's
>> > University of Belfast; 97 Lisburn Rd. Belfast, UK BT9 7BL
>> >
>> > _______________________________________________
>> > AMBER mailing list
>> > AMBER.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber
>> >
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
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Received on Mon Feb 17 2020 - 13:00:04 PST
