[AMBER] pmemd.cuda installation

From: Bacaita Simona <bsimona77.yahoo.com>
Date: Tue, 11 Feb 2020 19:40:44 +0000 (UTC)

Dear all Amber users,
I tried to install pmemd.cuda and I have the following error:
"make[3]: Leaving directory '/home/simona/amber16/AmberTools/src/arpack'
/usr/bin/nvcc -gencode arch=compute_20,code=sm_20 -gencode arch=compute_30,code=sm_30 -gencode arch=compute_50,code=sm_50 -gencode arch=compute_52,code=sm_52 -gencode arch=compute_53,code=sm_53 -use_fast_math -O3  -ccbin g++ -I../cusplibrary-0.6.0-rc -o cuda_cg_wrapper.o -c cuda_cg_wrapper.cu -DCUSPARSE -DPCG -DILU0 -DCSR

/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:

/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope

   return (char *) memcpy (__dest, __src, __n) + __n;


Makefile:175: recipe for target 'cuda_cg_wrapper.o' failed

make[2]: *** [cuda_cg_wrapper.o] Error 1

make[2]: Leaving directory '/home/simona/amber16/AmberTools/src/pbsa'

Makefile:447: recipe for target 'cuda_serial' failed

make[1]: *** [cuda_serial] Error 2

make[1]: Leaving directory '/home/simona/amber16/AmberTools/src'

Makefile:7: recipe for target 'install' failed
make: *** [install] Error 2"
I mention that I have made the serial and parallel installations, and also at pmemd.cuda installation the "./configure -cuda gnu" worked with no error. 
Just on running make install, it stopped due to the above error.
Any suggestion and help is most welcomed .

Simona Bacaita
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Received on Tue Feb 11 2020 - 12:00:02 PST
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