Is it for
1. N terminal alanine residue or
2.Any N terminal residue
2. Rest of Alanines in file(IF they were present) or
3.all the other amino acids
shouldn't have Hydrogen in it?
On Thu 6 Feb, 2020, 12:16 AM David A Case, <david.case.rutgers.edu> wrote:
> On Wed, Feb 05, 2020, ankita mehta wrote:
>
> >i wanted to generate prmtop and inpcrd files of attached pdb.
> >But , it is giving me errors.
>
> If you haven't yet done so, do a Google search on Amber "does not have a
> type". You'll get the general idea.
>
> Your pdb file has a N-terminal alanine with an H atom in it. But the
> Amber library for alanine in an Nterminal position uses H1/H2/H3, but no
> H.
>
> Simplest solution is to remove the H atom from the pdb file: tleap will
> build in the H1/H2/H3 for you.
>
> ....dac
>
>
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Received on Wed Feb 05 2020 - 11:30:01 PST
